Detailed information on CNT30605371


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513114Gossypium raimondiiJuglans regia49.2143.2583.2125forward
CNT30270368Gossypium raimondiiChenopodium quinoa29.5314.3485.3375forward
CNT30728535Gossypium raimondiiCorchorus capsularis42.1331.0188.79107forward
CNT30381598Gossypium raimondiiManihot esculenta42.9119.684.4109forward
CNT30526306Gossypium raimondiiPhaseolus vulgaris47.6412.9184.3121forward
CNT30487770Gossypium raimondiiOlea europaea39.7622.3983.17101forward
CNT30708850Gossypium raimondiiGlycine max31.510.19080forward
CNT30591239Gossypium raimondiiMusa acuminata66.146082.14168forward
CNT3084615Gossypium raimondiiVigna radiata29.136.4186.4974forward
CNT30626732Gossypium raimondiiDaucus carota29.135.9185.1474forward
CNT30621375Gossypium raimondiiCajanus cajan31.515.6988.7580forward
CNT30573808Gossypium raimondiiVitis vinifera37.414.9484.2195forward
CNT3038035Gossypium raimondiiCucumis melo37.0119.0786.1794forward
CNT30604528Gossypium raimondiiOryza punctata49.2110.9582.4125forward

Expression of CNT30605371

Peptides detected in this lncRNA

>peptide 1 (64 aa)
VCVYVCVCMHTIGKLLFLGFKCRGKVEGVENATRVTTLMRGQAVLLEDRVLDDAKYSALPASYH*

>peptide 2 (34 aa)
CVCMCVCVCIPLASSFSLASSVGAKLRGLKMLPG*

Sequence

>CNT30605371
TGTGTGTGTGTATGTGTGTGTGTGTATGCATACCATTGGCAAGCTCCTTTTCCTTGGCTTCAAGTGTCGGGGCAAAGTTGAGGGGGTTGAAAATGCTACC
AGGGTAACCACACTCATGAGGGGGCAAGCTGTATTGCTTGAAGATAGGGTCCTGGACGATGCGAAGTATTCGGCTTTACCGGCATCGTACCATTGAGGAG
CATTGATTATCCCAATCTTAGTGAAAACTTCCGGCAGAAGCATCCCTGCAACAC