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Detailed information on CNT30670698


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5N725|ALFC3_ORYSJ, E-value = 6e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690595Setaria viridisOryza sativa63.5531.1491.4279forward
CNT30158302Setaria viridisPistacia vera40.0940.4680.68176forward
CNT30222288Setaria viridisHordeum vulgare61.0563.3687.31268forward
CNT3085829Setaria viridisVigna radiata25.0629.4982.73110forward
CNT30458863Setaria viridisSaccharum spontaneum63.3319.991.73278forward
CNT304578Setaria viridisZea mays61.0548.5588.43268forward
CNT30609050Setaria viridisGossypium raimondii34.6230.6581.58152forward
CNT30349462Setaria viridisEragrostis tef54.4434.5491.63239forward
CNT30154837Setaria viridisPrunus persica36.4517.3580.62160forward
CNT3026858Setaria viridisPopulus trichocarpa88.1559.9180.36387forward
CNT3099714Setaria viridisOryza rufipogon63.5531.4591.4279forward

Expression of CNT30670698

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MVPLSTLMPGRTPPSLRTSTKGLPSLVFW*

>peptide 2 (54 aa)
MTLGGGLLVGASNLDGTLVDLDAGEDASLIEDIDEGLAVLGLLVEGLLKEDHATE

Sequence

>CNT30670698
ACTTGTAGTCCTTGACGTGGAGGCTCTCCGAGACGCCCTCGCCGGCGGCGGCATCACCCTTGTACGTGCCGAGGGTGGCCTCTGAGTTGGCCTTGCACCT
GGTGAGGAAGGCAGCCCTGGCCTTCTCCACATTCTCCACCTTGCCACCCCACGCCTTGAGGGTCAATGGCCAGCTGCGACGGCTCGTTGGGGCCAATGTT
AAGGACAGCACGCCACTTGGCAAAGCGGGCACCGGCCTCATAGTACTTGGCGCAGCGCTTGCCAAGGTCATCATGACCCTGGGTGGTGGTCTCCTTGTTG
GTGCCAGCAACCTCGATGGTACCCTTGTCGACCTTGATGCCGGGGAGGACGCCTCCCTCATTGAGGACATCGACGAAGGGCTTGCCGTCCTTGGTCTTCT
GGTAGAGGGTCTCCTCAAAGAGGATCACGCCACTGAGGT