« Back to Gossypium raimondii search


Detailed information on CNT30609114


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SJQ9|ALFC6_ARATH, E-value = 1e-60

BLAST vs NONCODE:
NONPOPT000956, E-value = 4e-35

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690595Gossypium raimondiiOryza sativa20.0614.5182.31130forward
CNT30671170Gossypium raimondiiSetaria viridis21.9149.1382.39142forward
CNT30522989Gossypium raimondiiSetaria italica40.1227.9980.77260forward
CNT30641234Gossypium raimondiiNymphaea colorata28.5531.0479.46185forward
CNT30615958Gossypium raimondiiSesamum indicum26.734.8183.24173forward
CNT30282161Gossypium raimondiiChenopodium quinoa18.6721.6585.95121forward
CNT3021376Gossypium raimondiiCitrullus lanatus46.643.5882.12302forward
CNT30729011Gossypium raimondiiCorchorus capsularis25.7724.8986.83167forward
CNT30526127Gossypium raimondiiPhaseolus vulgaris32.143.9781.73208forward
CNT30493761Gossypium raimondiiOlea europaea16.5140.0785.05107forward
CNT30636709Gossypium raimondiiCapsicum annuum37.9641.5585.37246forward
CNT30222685Gossypium raimondiiHordeum vulgare40.1288.4482.31260forward
CNT30564033Gossypium raimondiiActinidia chinensis23.328.7683.44151forward
CNT3085859Gossypium raimondiiVigna radiata47.6964.5179.94309forward
CNT30552124Gossypium raimondiiOryza glaberrima24.2316.9582.17157forward
CNT30458863Gossypium raimondiiSaccharum spontaneum39.6618.482.49257forward
CNT3015043Gossypium raimondiiZea mays17.1322.6583.78111forward
CNT30649836Gossypium raimondiiRosa chinensis44.9125.9481.1291forward
CNT30625244Gossypium raimondiiDaucus carota25.1524.7783.44163forward
CNT30720854Gossypium raimondiiTriticum spelta20.3719.4483.33132forward
CNT30349462Gossypium raimondiiEragrostis tef27.1625.4381.82176forward
CNT30479170Gossypium raimondiiArabidopsis halleri13.1220.0987.0685forward
CNT30622084Gossypium raimondiiCajanus cajan28.0924.581.87182forward
CNT30154837Gossypium raimondiiPrunus persica50.7735.6880.85329forward
CNT30433768Gossypium raimondiiPapaver somniferum42.918.9981.29278forward
CNT30571536Gossypium raimondiiVitis vinifera22.0728.5486.71143forward
CNT3026774Gossypium raimondiiPopulus trichocarpa39.663180.54257forward
CNT30120586Gossypium raimondiiCitrus clementina11.8823.0592.2177forward
CNT3036222Gossypium raimondiiCucumis melo17.5931.1585.09114forward
CNT30113854Gossypium raimondiiFicus carica47.6943.5881.88309forward
CNT30724887Gossypium raimondiiLupinus angustifolius52.9325.7579.59343forward

Expression of CNT30609114

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MALRLRVASSSLCPPDKNTIAGTAAGTVRCKNTLCHRSTLFNVM*

>peptide 2 (60 aa)
MSCDPSTRISGSTMGTRPHCWQMAAYIASPLAFSWIASSVGSLALILRTARHLAKRAPAS*

>peptide 3 (59 aa)
LNMKALCSTLTNLCITLVCTQGGLRVSLAPNKESILCFLHVFLLSSPGLESALLKGTSK*

Sequence

>CNT30609114
CTTAACATGAAGGCTCTCTGCAGCACCCTCACTAATCTTTGCATCACCCTTGTATGTACCCAAGGTGGCCTCCGAGTTAGCCTTGCACCTAACAAGGAAA
GCATCTTGTGCTTTCTTCACGTTTTCCTCCTTTCCAGCCCAGGCCTTGAGAGTGCTCTGCTGAAGGGCACGTCCAAATGAGAATGAGAGTGACCATGGTT
TCTTGGTCTGGAGCTTGTTCATGGCATTAAGGTTAAGGGTAGCCTCCTCCTCACTTTGCCCACCAGACAAGAACACAATAGCAGGGACTGCAGCAGGGAC
GGTACGCTGCAAGAACACGCTCTGTCACCGCAGCACACTTTTTAATGTCATGTGATCCGTCAACAAGAATTTCAGGCTCAACAATGGGGACAAGGCCACA
TTGCTGGCAGATGGCAGCATACATAGCTAGCCCATTGGCATTTTCTTGGATTGCAAGCTCGGTTGGCTCATTAGCACTAATCTTAAGGACAGCACGCCAT
TTAGCAAAGCGGGCACCAGCTTCATAGTACTTCTGGCATCGCTGTGCAAGGCCATCTAGACCCTGGGTGAAAGTTTCGCCATTGGTTCCGTTAAGCTCAA
CGGTACCCTTGTCGACCTTGATGCCAGGGAGGACACCACCTTCCTTCA