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Detailed information on CNT30457732


BLAST search results

BLAST vs Swiss-Prot:
sp|P08440|ALF_MAIZE, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690595Saccharum spontaneumOryza sativa32.0647.6690.16427forward
CNT30513666Saccharum spontaneumJuglans regia17.7245.9179.24236forward
CNT30374131Saccharum spontaneumArabidopsis thaliana13.9637.0581.72186forward
CNT30615958Saccharum spontaneumSesamum indicum9.5325.5582.68127forward
CNT30222288Saccharum spontaneumHordeum vulgare31.7610087.94423forward
CNT30552124Saccharum spontaneumOryza glaberrima37.2453.5689.31496forward
CNT304578Saccharum spontaneumZea mays32.9679.5394.99439forward
CNT3066783Saccharum spontaneumLeersia perrieri16.1465.9589.3215forward
CNT30717283Saccharum spontaneumMalus domestica golden13.2126.2782.95176forward
CNT30683148Saccharum spontaneumTriticum urartu15.6238.5992.79208forward
CNT30720854Saccharum spontaneumTriticum spelta14.3428.1391.1191forward
CNT30349462Saccharum spontaneumEragrostis tef50.9898.1290.57679forward
CNT30364112Saccharum spontaneumSorghum bicolor24.136.4896.88321forward
CNT30355098Saccharum spontaneumLactuca sativa7.5827.385.15101forward
CNT30370572Saccharum spontaneumOryza glumipatula4.6525.4187.162forward
CNT30149431Saccharum spontaneumBrachypodium distachyon14.4940.0491.19193forward
CNT3099714Saccharum spontaneumOryza rufipogon27.2540.9289.53363forward
CNT30580631Saccharum spontaneumEchinochloa crusgalli24.710093.62329forward

Expression of CNT30457732

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MVPLSTLMPGRTPPSLRTSTKGLPSLVFW*

>peptide 2 (47 aa)
MIQTSCCLQTQHIEWFLPIHKQQYSIVLTKQKGTARFSIGSTKLHEI*

>peptide 3 (40 aa)
PNSFGIFKSLILMSFVSSAKYDPNKLLSPNSAYRMVFADT*

>peptide 4 (65 aa)
MFSTLPAQALRVLAWRARPKEKDRDHGFLVLSLFMALRFRVASSSLCPPERKTTAGTAARTVSVT*

>peptide 5 (51 aa)
MYWRAPGQQKRSSRRARRFSSTFSTLMLERRLPMVPVDSSAARIPLPGVPM*

>peptide 6 (93 aa)
MRAIDKDLRLNNRHQTVLLADDGIASQTLSIQVNCKLRWLIGANLENSTPLGKAGTSLVVLGAALAKVIMALGGGLLVGACNLNGALVDLDAR*

Sequence

>CNT30457732
TCCTAACTCTTTTGGTATCTTTAAATCTTTAATTCTCATGAGTTTTGTCTCCTCAGCAAAATATGATCCAAACAAGTTGCTGTCTCCAAACTCAGCATAT
AGAATGGTTTTTGCCGATACATAAACAGCAATACAGCATAGTTTTAACAAAACAAAAAGGGACTGCTCGATTCTCCATCGGCAGTACCAAATTACACGAA
ATTTAACACCAAAGAGACTAGTTAATATACGAATATAAAGATAACCATCATCCACATAGGAAGCATGTTTTTTTTTTATGTCCGAATATAAGCTCAAACG
AGCAAACCACACTCAGCAACCTAGCTCGTAGGCAGGAGTTCCAAAACGGGCACTCAAAGAGAAGCAACTCAGTACTTGTAGTCCTTGACGTGGAGGCTCT
CGGTGTCAGCGGCAGCATCACCCTTGTAGGTGCCGAGGGTAGCCTCAGAGTTGGCCTTGCACCTGGCGAGGAAGGCCGCCCTAGCCTTCTCGATGTTCTC
CACCTTGCCAGCCCAGGCCTTGAGGGTGCTCGCCTGGAGGGCACGGCCGAAGGAGAAGGACAGGGACCACGGCTTCTTAGTGCTGAGCTTGTTCATGGCA
TTGAGGTTCAGGGTGGCCTCCTCCTCGCTCTGTCCACCGGAGAGGAAGACAACAGCAGGCACAGCAGCAAGGACGGTCTCAGTGACATAAGCGCAGCGAT
CAATGTCATGAGGGCCATCGACAAGGATCTCAGGCTCAACAATCGGCACCAGACCGTTCTCCTGGCAGATGATGGCATAGCGAGCCAGACCCTGAGCATT
CAGGTCAATTGCAAGCTGCGATGGCTCATTGGGGCCAATCTTGAGAACAGCACGCCACTTGGCAAAGCGGGCACCAGCCTCGTAGTACTTGGCGCAGCGC
TTGCCAAGGTCATCATGGCCTTGGGTGGTGGTCTCCTTGTCGGTGCCTGCAACCTCAATGGTGCCCTTGTCGACCTTGATGCCAGGTAGGACGCCTCCCT
CCTTGAGGACATCAACAAAAGGCTTGCCATCCTTGGTCTTCTGGTAGAGGGTCTCCTCGAAGAGGATCACACCACTGATGTACTGGAGGGCACCAGGGCA
GCAGAAAAGGAGCTCACGGAGGGCACGGCGGTTCTCCTCCACGTTCTCGACATTGATGCTGGAAAGGCGCTTGCCAATGGTGCCAGTGGACTCATCAGCA
GCAAGGATACCCTTGCCAGGGGTGCCAATGTAGGCAGCATTCTTGATGAGCTCATCTGCAAAATAACAGACAAAAAAATTCAGCACAAGAATGGGACTTA
ACAATCAATAAGCATAAGCATGGTCATCTAAC