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Detailed information on CNT30522989


BLAST search results

BLAST vs Swiss-Prot:
sp|P17784|ALFC1_ORYSJ, E-value = 1e-113

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690595Setaria italicaOryza sativa32.5133.7188.08302forward
CNT30675108Setaria italicaSetaria viridis34.8881.4199.69324forward
CNT30641283Setaria italicaNymphaea colorata31.6515.0185.03294forward
CNT30375244Setaria italicaArabidopsis thaliana15.7228.5280.14146forward
CNT30615958Setaria italicaSesamum indicum15.0728.1781.43140forward
CNT30282161Setaria italicaChenopodium quinoa25.0841.6882.4233forward
CNT3021376Setaria italicaCitrullus lanatus27.3436.6581.89254forward
CNT30729011Setaria italicaCorchorus capsularis14.7520.4285.4137forward
CNT30636709Setaria italicaCapsicum annuum18.9529.7385.23176forward
CNT30222508Setaria italicaHordeum vulgare29.1790.9490.77271forward
CNT30568685Setaria italicaActinidia chinensis23.4719.4583.03218forward
CNT30552330Setaria italicaOryza glaberrima31.7540.6989.15295forward
CNT30437900Setaria italicaAegilops tauschii11.1923.7489.42104forward
CNT30612844Setaria italicaArabis alpina19.1626.8580.9178forward
CNT30458863Setaria italicaSaccharum spontaneum56.437.5194.08524forward
CNT30135152Setaria italicaLolium perenne33.4847.9990.03311forward
CNT3015043Setaria italicaZea mays27.6652.4591.83257forward
CNT30609114Setaria italicaGossypium raimondii27.9940.1280.77260forward
CNT30650515Setaria italicaRosa chinensis33.4839.5780.39311forward
CNT30720854Setaria italicaTriticum spelta22.9331.3787.79213forward
CNT30349462Setaria italicaEragrostis tef35.247.2590.52327forward
CNT30364112Setaria italicaSorghum bicolor25.9427.3993.36241forward
CNT30154837Setaria italicaPrunus persica25.425.678.81236forward
CNT30433768Setaria italicaPapaver somniferum43.8127.878.62407forward
CNT30571536Setaria italicaVitis vinifera12.4923.1582.76116forward
CNT3026774Setaria italicaPopulus trichocarpa23.6826.5481.36220forward
CNT30120586Setaria italicaCitrus clementina9.5826.6591.0189forward
CNT3036222Setaria italicaCucumis melo8.9322.6885.5483forward
CNT30149185Setaria italicaBrachypodium distachyon11.1927.8889.42104forward
CNT30113854Setaria italicaFicus carica42.6355.8582.32396forward

Expression of CNT30522989

Peptides detected in this lncRNA

>peptide 1 (35 aa)
DNRSGKLQKKHVSEKYKARCCNPSQRRYHPDQLSI*

>peptide 2 (32 aa)
MVLPICNQHFSKDKQNVAARFSIGRSKLHEIN*

>peptide 3 (72 aa)
MAFRFRVASSSLCPPERKTMAGTAAGTVLWRVRTVYSAMTSGVTFLESDPGVTMLGFRRVPSRRTWCSLRAL*

>peptide 4 (43 aa)
MVLVESLVAGSKDHLRDISTALNVMRAIDEDLRLHNRRRACHPW

Sequence

>CNT30522989
CGATAATAGAAGCGGAAAATTGCAAAAAAAGCATGTGAGCGAAAAATATAAAGCTAGGTGCTGCAATCCATCACAACGAAGATATCACCCCGACCAACTC
AGCATATAGAATGGTTTTGCCGATATGTAACCAGCATTTCAGCAAAGATAAACAAAATGTGGCTGCACGATTCTCCATCGGCAGGTCCAAATTACACGAG
ATTAATTAACACCAACGAAACTACTTAATATACGAAAATGTAAAGGTAACGAACCATCATCCACAAAAGGGAAGCAGGTTCAGGTTTTCTTGATGTCCGG
ATATATGCTCTAAGGAGCAAACCACACTCAGCAACAGGTCCGAAACGGATACCGCAAGGAGAGGCAGATCAGTACTTGTAGTCCTTCACGTGGAGGCTCT
CAGAGACACCCTCGCCGGCGGCAGCGTCACCCTTGTATGTGCCGAGGGTAGCCTCAGAGTTGGCCTTGCACCTGGCGAGGAAGGCCGCCCTAGCCTTCTC
CACGTTCTCCTCCTTGCCAGCCCAGGCCTTGAGGGTGCTCGCCTGGAGGGCACGGCCGAAAGAGAAGGACAGGGACCACGGCTTCTTGGTGTTGAGCTTG
TTCATGGCGTTCAGGTTCAGGGTGGCCTCCTCCTCGCTCTGTCCACCTGAGAGGAAGACGATGGCGGGCACAGCAGCAGGGACGGTCCTCTGGAGGGTGC
GGACAGTGTACTCAGCAATGACCTCAGGAGTCACCTTCTTGGAGTCAGACCCAGGGGTCACCATGTTGGGCTTCAGGAGGGTACCCTCAAGGAGGACATG
GTGCTCGTTGAGAGCCTTGTAGCAGGCAGCAAGGACCACCTCAGAGACATAAGCACAGCGCTCAATGTCATGAGAGCCATCGACGAGGATCTCAGGCTCC
ACAATCGACGAAGGGCTTGCCATCCTTGG