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Detailed information on CNT3021292


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SJQ9|ALFC6_ARATH, E-value = 5e-83

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671170Citrullus lanatusSetaria viridis20.6848.184.17139forward
CNT30374131Citrullus lanatusArabidopsis thaliana16.8222.5183.19113forward
CNT30615958Citrullus lanatusSesamum indicum17.5623.7483.9118forward
CNT30282161Citrullus lanatusChenopodium quinoa23.0727.7383.87155forward
CNT30526127Citrullus lanatusPhaseolus vulgaris27.9839.7584.57188forward
CNT30222685Citrullus lanatusHordeum vulgare26.6460.8880.45179forward
CNT30564033Citrullus lanatusActinidia chinensis24.431.2482.32164forward
CNT3085859Citrullus lanatusVigna radiata27.9839.2584.04188forward
CNT3074945Citrullus lanatusBrassica juncea21.5815.6282.07145forward
CNT30649836Citrullus lanatusRosa chinensis20.8312.4885.71140forward
CNT30717283Citrullus lanatusMalus domestica golden20.8320.980.71140forward
CNT30625244Citrullus lanatusDaucus carota19.6420.0681.82132forward
CNT30349462Citrullus lanatusEragrostis tef29.3228.4783.25197forward
CNT30364112Citrullus lanatusSorghum bicolor20.9816.0281.56141forward
CNT30622084Citrullus lanatusCajanus cajan24.8522.4884.43167forward
CNT30571536Citrullus lanatusVitis vinifera23.2131.1486.54156forward
CNT30643281Citrullus lanatusCannabis sativa22.0238.2483.78148forward
CNT30120586Citrullus lanatusCitrus clementina14.1428.4488.4295forward
CNT3036222Citrullus lanatusCucumis melo16.2229.7888.99109forward

Expression of CNT3021292

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MKTLCRTLAELRIALVFCLASCEESSPCLLNILLLSCPCLESTLLKGTSK*

>peptide 2 (61 aa)
INPCFFFFCFSTKRENQNNSLNNPNKNFKRLIVVPEHHQHISKCSNLMLKQTTQQHNNHRT*

>peptide 3 (36 aa)
MQQEPARSPQRICQCCEYHQQESQAQQWEQDHSPGR*

>peptide 4 (38 aa)
MALRLRVASSSLCPPDKKTMAGTAAGTVRSRARTVRTW*

>peptide 5 (35 aa)
DKSLFFLLLFFNQKRKPEQLTQQPQQKLQKAYCCP*

Sequence

>CNT3021292
AGATAAATCCCTGTTTTTTCTTCTTTTGTTTTTCAACCAAAAGAGAAAACCAGAACAACTCACTCAACAACCCCAACAAAAACTTCAAAAGGCTTATTGT
TGTCCCTGAACATCATCAACACATTTCAAAATGTTCTAACCTTATGCTTAAACAAACTACACAACAACATAATAACCACAGAACATGACAATGACCCTTT
TTAGTATGTGTAACCCTTGACATGAAGACTCTCTGCCGCACCCTCGCTGAGCTCCGCATCGCCCTTGTATTTTGCCTTGCATCTTGTGAGGAAAGCAGCC
CTTGCCTTCTCAACATTCTCCTCCTTTCCTGCCCATGCCTTGAGAGTACTTTGCTGAAGGGCACGTCCAAATGAGAAAGACAGCGACCATGGCTTCTTTC
CCTTCAGCTTGTTCATGGCATTGAGGTTGAGGGTTGCCTCCTCCTCGCTCTGCCCGCCTGACAAGAAAACGATGGCAGGAACCGCAGCAGGGACTGTACG
TTCTAGAGCCCGGACGGTGAGGACGTGGTGATCGTTGAGGGCCTTGTAGCATGCAGCAAGAACCCGCTCGGTCACCTCAGCGCATTTGTCAATGCTGTGA
GTACCATCAACAAGAATCTCAGGCTCAACAATGGGAACAAGACCATTCTCCTGGCAGATAGCAGCATATCGA