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Detailed information on CNT30568685


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670785Actinidia chinensisSetaria viridis15.1767.4684.12170forward
CNT30522989Actinidia chinensisSetaria italica19.4523.4783.03218forward
CNT3021376Actinidia chinensisCitrullus lanatus20.3432.980.7228forward
CNT30526127Actinidia chinensisPhaseolus vulgaris8.4720.0883.1695forward
CNT30493761Actinidia chinensisOlea europaea9.941.5787.39111forward
CNT30222685Actinidia chinensisHordeum vulgare25.3396.680.28284forward
CNT3085859Actinidia chinensisVigna radiata14.1833.1983.65159forward
CNT30458863Actinidia chinensisSaccharum spontaneum27.4822.0582.14308forward
CNT3015043Actinidia chinensisZea mays14.4533.0683.33162forward
CNT30349462Actinidia chinensisEragrostis tef19.4531.583.03218forward
CNT30370572Actinidia chinensisOryza glumipatula5.826.6487.6965forward

Expression of CNT30568685

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MKTIQPQTSRRLFLKLLILLPVTKSKIKMKTKKRT*

>peptide 2 (43 aa)
MIPGDEDTPDPTHAHCHHMISTAKKRKNNQAKSKTQSISTCSP*

>peptide 3 (40 aa)
LRVKVNFCWNYMKILQFIFFELHLRNGGLMISQSSKQNLN*

>peptide 4 (52 aa)
MAFRLRVASSSLCPPDKNTTAGTAAGIVLCRARTVYSATTSGATLGASDPGVT

>peptide 5 (47 aa)
MEALGRSLTQRTAALVGSEGCLGVGLAPLEEHSHGLLHILHLALPCL*

Sequence

>CNT30568685
TTAAGGGTAAAAGTAAATTTTTGTTGGAATTACATGAAAATTTTACAATTTATCTTTTTTGAGCTTCATTTAAGAAATGGTGGATTGATGATATCCCAAA
GCTCAAAGCAAAACCTCAATTAAAGCATAAACTCAATTAAAGCAAAAATCAACCCAAAGCTGAGGCCGAGCGCTAGTTCGTTATTGAACACATCAACAAA
AACCCAAAACCATAGCAGCAACTGATCATCAACCCAAAACTCAGGCTAACACGCACAAGTTCGATGTTATTGAACACATCAACAGAAACCCAAAACCAGT
AGCAGCAACTGTTCATCAACCCAAAGCTCAGGCGAATACCACAAGCGCCAAGAACACAAAAACTGCCAGCTGGTGCTCGTTCATTATTGAACACATCAAC
AGAAATCCAAAACCATAGCAGCAACTGTTCTACAGAAGGGACAATAATCATGGAAACCAACTTCAAAAGATTAACATCAATATTCTTAGAAAACCAAAAA
GGATGAAAACCATCCAACCTCAAACAAGCCGACGTTTGTTCCTCAAGCTTCTTATTCTACTACCAGTCACTAAAAGCAAGATAAAAATGAAAACCAAGAA
AAGAACCTAAAGCCATGATACCTGGGGATGAAGATACTCCTGACCCCACCCACGCACACTGCCATCACATGATCTCCACAGCAAAAAAGAGAAAAAATAA
CCAAGCGAAAAGCAAAACTCAATCAATCAGTACTTGTAGTCCTTGACATGGAGGCTCTCGGACGCTCCCTCACTCAACGAACCGCTGCCCTTGTAGGTTC
CGAGGGTTGCCTCGGAGTTGGCCTTGCACCTTTGGAGGAACACAGCCATGGCCTTCTCCACATTCTCCACCTTGCCCTGCCATGCCTTTAGGGTACTCGC
CTGAAGAGCCCTTCCAAAGGAAAATGTGAGGGTCCATGGCTTCTTAGTCTTGAGCTTGTTCATGGCGTTCAGGTTAAGGGTGGCCTCCTCCTCGCTCTGC
CCACCGGACAAGAACACCACAGCCGGAACGGCAGCAGGCATTGTCCTCTGCAGGGCACGAACGGTGTACTCCGCCACCACCTCAGGGGCCACCTTGGGTG
CCTCCGACCCAGGGGTAACCA