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Detailed information on CNT304578


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690595Zea maysOryza sativa54.1733.3789.3299forward
CNT30670698Zea maysSetaria viridis48.5561.0588.43268forward
CNT30513666Zea maysJuglans regia42.7545.9179.24236forward
CNT30374131Zea maysArabidopsis thaliana33.737.0581.72186forward
CNT30615958Zea maysSesamum indicum23.0125.5583.46127forward
CNT30158302Zea maysPistacia vera19.3824.682.24107forward
CNT30222288Zea maysHordeum vulgare61.4180.1487.02339forward
CNT30437501Zea maysAegilops tauschii36.2354.583.5200forward
CNT30612844Zea maysArabis alpina31.3426.0979.19173forward
CNT30457732Zea maysSaccharum spontaneum79.5332.9694.99439forward
CNT3066783Zea maysLeersia perrieri12.3220.8694.1268forward
CNT30649836Zea maysRosa chinensis32.4315.9584.92179forward
CNT30717283Zea maysMalus domestica golden31.8826.2781.82176forward
CNT30349462Zea maysEragrostis tef68.6654.7791.29379forward
CNT30154837Zea maysPrunus persica52.1731.2479.51288forward
CNT3026858Zea maysPopulus trichocarpa40.0434.2180.09221forward
CNT3099714Zea maysOryza rufipogon54.1733.7189.3299forward
CNT30579988Zea maysEchinochloa crusgalli29.5350.7893.25163forward
CNT30724887Zea maysLupinus angustifolius59.2424.5579.51327forward

Expression of CNT304578

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MALGGGLLISANNLNGALVNLDAREDASLLEDINKRLAILGLLVQGLLEEDHTADVLESTRAADMIDARRDGGYEDRRRGGVGRNG*

>peptide 2 (62 aa)
LVHGIERLVAGSKDGLSDVSAAINVMRAINKDLRLNNWHQTILLADDGIASQTLSVQVDGKL*

>peptide 3 (50 aa)
MVPLSTLMPGRTPPSLRTSTKGLPSLVFWYRVSSKRITPLMYWRAPGQPT*

Sequence

>CNT304578
AGCTTGTTCATGGCATTGAGCGCCTTGTAGCAGGCAGCAAGGACGGTCTCAGTGACGTAAGCGCAGCGATCAATGTCATGAGGGCCATCAACAAGGATCT
CAGGCTCAACAATTGGCACCAGACCATTCTCCTGGCAGATGATGGCATAGCGAGCCAGACCCTGAGCGTTCAGGTCGATGGCAAGCTGTGATGGCTCATT
AGGGCCAATCTTGAGAACAGCGCGCCACTTGGCAAAGCGGGCACCTGCCTCGTAGTACTTGGCGCAACGCTTGCCAAGGTCGTCATGGCCTTGGGTGGTG
GTCTCCTTATCAGTGCCAACAACCTCAATGGTGCCCTTGTCAACCTTGATGCCAGGGAGGACGCCTCCCTCCTTGAGGACATCAACAAAAGGCTTGCCAT
CCTTGGTCTTCTGGTACAGGGTCTCCTCGAAGAGGATCACACCGCTGATGTACTGGAGAGCACCAGGGCAGCCGACATGATCGATGCTCGACGCGACGGA
GGCTACGAAGATCGCAGGCGAGGTGGTGTTGGGAGGAATGGTTAAGGCAGGC