Detailed information on CNT30636709


BLAST search results

BLAST vs Swiss-Prot:
sp|P17784|ALFC1_ORYSJ, E-value = 2e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690595Capsicum annuumOryza sativa34.822.9982.04206forward
CNT30670785Capsicum annuumSetaria viridis29.3969.0582.18174forward
CNT30522989Capsicum annuumSetaria italica29.7318.9585.23176forward
CNT30641234Capsicum annuumNymphaea colorata26.6926.5181.01158forward
CNT30615958Capsicum annuumSesamum indicum31.7637.8385.64188forward
CNT30282161Capsicum annuumChenopodium quinoa26.0127.5585.06154forward
CNT3021376Capsicum annuumCitrullus lanatus28.5524.3983.43169forward
CNT30526127Capsicum annuumPhaseolus vulgaris16.8921.1482100forward
CNT30222685Capsicum annuumHordeum vulgare16.2232.6591.6796forward
CNT30564033Capsicum annuumActinidia chinensis25.5128.7683.44151forward
CNT3085859Capsicum annuumVigna radiata30.0737.1679.21178forward
CNT30552124Capsicum annuumOryza glaberrima34.822.2582.52206forward
CNT30145974Capsicum annuumMedicago truncatula13.5125.1683.7580forward
CNT30458863Capsicum annuumSaccharum spontaneum35.314.9684.69209forward
CNT3015043Capsicum annuumZea mays16.7220.286.8799forward
CNT30609114Capsicum annuumGossypium raimondii41.5537.9685.37246forward
CNT30349462Capsicum annuumEragrostis tef35.330.281.34209forward
CNT30571536Capsicum annuumVitis vinifera22.6426.7585.82134forward
CNT30113854Capsicum annuumFicus carica41.7234.8483.81247forward

Expression of CNT30636709

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MSQDQNNVPQKVLIKRKKKRKKKALPYYVH*

>peptide 2 (70 aa)
ANAKDNVHLINQPRKLLHERCHKTKIMFLKKFLLNGKKKEKKKPYHIMSTDRHIRKTILSSHFQNRNQET*

Sequence

>CNT30636709
GGCAAATGCAAAAGATAATGTTCATTTAATAAACCAACCCCGAAAACTGTTACATGAAAGATGTCACAAGACCAAAATAATGTTCCTCAAAAAGTTCTTA
TTAAACGGAAAAAAAAAAGAAAAAAAAAAGCCTTACCATATTATGTCCACTGATAGACACATTCGTAAAACCATATTGTCATCTCATTTTCAAAACAGAA
ATCAAGAAACATAAACCAAAAACTAAAACTTTGATCTAGTACTTGTAGTCCTTGACGTGAAGGCTCTCGGAAGCACCTTCACTCAAGTTGGAAGCTCCGG
CATACTTTCCGAGGGTAGCCTCGGAGTTGGCCTTGCACCTGGTAAGGAATGCAGCTTGTGCCTTCTGAACGTTCTCTTCCTTTCCGGCCCAGGCCTTGAG
GGTGCTCTGCTGAAGAGCACGTCCGAAAGAGAAGGAAAGTGACCATGGCTTCTTGGTCTGGAGCTTGTTCATGGCATTGAGGTTGACAGTGGCTTCCTCT
TCACTTTGACCACCAGACAAGAACACCACAGCGGGGACAGCAGCCGGCATGGTGCGCTGCAAGGCCATCAAGACCTTGGGTGGTGGTCTCAC