« Back to Oryza glaberrima search


Detailed information on CNT30552124


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5N725|ALFC3_ORYSJ, E-value = 9e-117

BLAST vs NONCODE:
NONORUT000701, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690595Oryza glaberrimaOryza sativa46.7648.3399.54433forward
CNT30671170Oryza glaberrimaSetaria viridis14.3646.0291.73133forward
CNT30641234Oryza glaberrimaNymphaea colorata16.3125.3486.09151forward
CNT30615958Oryza glaberrimaSesamum indicum13.525.1583.2125forward
CNT30282161Oryza glaberrimaChenopodium quinoa30.2450.0980.36280forward
CNT3021376Oryza glaberrimaCitrullus lanatus27.9737.3778.38259forward
CNT30729011Oryza glaberrimaCorchorus capsularis19.9827.5781.62185forward
CNT30636709Oryza glaberrimaCapsicum annuum22.2534.882.52206forward
CNT30457732Oryza glaberrimaSaccharum spontaneum53.5637.2489.31496forward
CNT30609114Oryza glaberrimaGossypium raimondii16.9524.2382.17157forward
CNT30649836Oryza glaberrimaRosa chinensis30.4525.1380.14282forward
CNT30625244Oryza glaberrimaDaucus carota14.2520.0683.33132forward
CNT30720854Oryza glaberrimaTriticum spelta22.7931.0884.36211forward
CNT30349462Oryza glaberrimaEragrostis tef60.3780.7887.66559forward
CNT30370572Oryza glaberrimaOryza glumipatula6.725.4187.162forward
CNT30571536Oryza glaberrimaVitis vinifera13.524.9583.2125forward
CNT3026774Oryza glaberrimaPopulus trichocarpa23.7626.5482.27220forward
CNT30113854Oryza glaberrimaFicus carica33.3743.5881.88309forward

Expression of CNT30552124

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MALRFTVASSSLCPPERKTMAGTAARTFSVT*

>peptide 2 (80 aa)
MRAIDKDLRLDNRHQPVLLADDGIASKTLSIQVNGKLRWLVGANLEDGTPLGEASTGLVVLGATLAKRTLVLAAVGRHGC*

Sequence

>CNT30552124
GAACCGAGACACAGCAAAACGCCATATAGGTAAAAGGTTTAATTAACATAGGAGTACAGCAGAAAATAACAATAAAAAGATAGCATGGAATTAAAGCCGC
TGCTCCAATTTACCATACGCAGCATTTGATTACAGGAATACCAAAAAACTACTACCGATGACAGGTATTAATTATTAAAAAGCACAGGTTCAGATTATTG
CGACAAAAGTTTTTGATACCCGTAAGATTGGACGCTTGATAGCCAAACCACACTCAGAACCCTAAATATGCATACGGAGGATGTCCAATCGGATCTTCAG
CCACCACCAGAGGCAGATCAGTACTTGTAGTCCTTGACGTGAAGGCTCTCAGAGGCACCCTCGCCGAGCACAGCATCACCCTGGTATGTACCAAGGGTAG
CCTCAGAGTTGGCCTTGCACCTGGTGATGAAGGCCTTCTGCGCCTTCACCACGTTCTCCGTCTTGCCGCCCCAGGCCTTGAGCGTGCTCTGCTGAAGAGC
ACGGCCGAAGGAGAAGGACAGAGCCCACGGCTTCTTGGTGCTGAGCTTGTTCATGGCGTTGAGGTTCACGGTCGCCTCCTCCTCGCTCTGTCCACCAGAG
AGGAAGACAATGGCAGGCACGGCAGCGAGGACCTTCTCGGTGACATAGGCACAGCGCTCAATGTCATGAGAGCCATCGACAAGGATCTCAGGCTCGACAA
TCGGCACCAGCCCGTTCTCCTGGCAGATGATGGCATAGCGAGCAAGACCCTGAGCATTCAGGTCAATGGAAAGCTGCGATGGCTCGTTGGGGCCAATCTT
GAGGACGGCACGCCACTTGGCGAAGCGAGCACCGGCCTCGTAGTACTTGGCGCAACGCTTGCCAAGCGTACCCTTGTACTTGCCGCAGTAGGCCGACATG
GTTGCTGAGGAATCGAGAGGACGCAA