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Detailed information on CNT30641234


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SJQ9|ALFC6_ARATH, E-value = 2e-68

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671170Nymphaea colorataSetaria viridis27.3556.487.73163forward
CNT3021376Nymphaea colorataCitrullus lanatus43.6237.5278.85260forward
CNT30636709Nymphaea colorataCapsicum annuum26.5126.6981.01158forward
CNT30222508Nymphaea colorataHordeum vulgare33.2266.4487.88198forward
CNT30552124Nymphaea colorataOryza glaberrima25.3416.3186.09151forward
CNT30612844Nymphaea colorataArabis alpina33.7230.3281.59201forward
CNT30609114Nymphaea colorataGossypium raimondii31.0428.5579.46185forward
CNT30349462Nymphaea colorataEragrostis tef21.9818.9387.02131forward
CNT30433768Nymphaea colorataPapaver somniferum31.7112.9179.89189forward
CNT30571536Nymphaea colorataVitis vinifera20.6424.5584.55123forward
CNT30113854Nymphaea colorataFicus carica39.263381.2234forward

Expression of CNT30641234

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MTSGVTLAFKRARSAEEELAEGPAVGLNVLDVDAGKTLADRASALVGSKDTLARGADVGRVGDE

>peptide 2 (42 aa)
MRPPPEQHRPCMYPKSPGSWPCTWIGKQPAQPKRSPPFLSMS*

>peptide 3 (29 aa)
MAFKLRVASSSLCPPERKTMAGTAAGTVL*

Sequence

>CNT30641234
AAATTCATAACTTCACCTGAATAAAGATGCAGGGAAGACAAAGAAGCAAACTTCTCTAATACTTGTAGTCCTTGACGTGCAGGCTCTCGGATGCGCCCGC
CACCTGAGCAGCATCGCCCTTGTATGTACCCAAAGTCGCCTGGGAGTTGGCCTTGCACCTGGATAGGAAAGCAGCCTGCGCAGCCGAAACGTTCTCCTCC
TTTCCTTTCCATGTCTTGAGTGTGCTCTGCTGCAGGGCACGACCGAAGGAGAATGACAAGCTCCATGGCTTCTTGGTCTTGAGCTGGTTCATGGCGTTCA
AGTTGCGAGTGGCCTCCTCCTCGCTCTGTCCTCCAGAGAGGAAGACGATGGCGGGCACGGCAGCTGGGACGGTCCTCTGAAGGGCCCGGACAGTGTACTC
GGCAATGACCTCTGGCGTGACCTTGGCATTCAAGAGAGCCAGGAGTGCAGAAGAGGAGCTCGCGGAGGGCCCGGCGGTTGGACTCAACGTTCTCGACGTT
GATGCTGGCAAGACGCTTGCCGATCGTGCCAGTGCTCTCGTCGGCAGCAAGGATACCCTTGCCCGGGGTGCCGATGTAGGCCGCGTTGGCGATGAG