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Detailed information on CNT30113854


BLAST search results

BLAST vs Swiss-Prot:
sp|P17784|ALFC1_ORYSJ, E-value = 2e-101

BLAST vs NONCODE:
NONPOPT000956, E-value = 4e-54

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690595Ficus caricaOryza sativa41.4732.8182.31294forward
CNT30670785Ficus caricaSetaria viridis23.2765.4883.64165forward
CNT30522989Ficus caricaSetaria italica55.8542.6382.32396forward
CNT30641234Ficus caricaNymphaea colorata3339.2681.2234forward
CNT30513666Ficus caricaJuglans regia36.6750.5880.38260forward
CNT30374131Ficus caricaArabidopsis thaliana20.4528.8882.76145forward
CNT30615958Ficus caricaSesamum indicum22.4331.9984.91159forward
CNT30282161Ficus caricaChenopodium quinoa51.4865.379.73365forward
CNT3021376Ficus caricaCitrullus lanatus42.034381.21298forward
CNT30729011Ficus caricaCorchorus capsularis23.5524.8980.24167forward
CNT30493761Ficus caricaOlea europaea23.1361.4282.32164forward
CNT30636709Ficus caricaCapsicum annuum34.8441.7283.81247forward
CNT30222508Ficus caricaHordeum vulgare33.5779.8783.19238forward
CNT30564032Ficus caricaActinidia chinensis11.2821.7487.580forward
CNT3085640Ficus caricaVigna radiata36.3948.579.46258forward
CNT30552124Ficus caricaOryza glaberrima43.5833.3781.88309forward
CNT30437501Ficus caricaAegilops tauschii19.4637.685.51138forward
CNT30458863Ficus caricaSaccharum spontaneum55.8528.3582.58396forward
CNT30135152Ficus caricaLolium perenne36.5339.9782.63259forward
CNT3015043Ficus caricaZea mays34.2749.5982.3243forward
CNT30609114Ficus caricaGossypium raimondii43.5847.6981.88309forward
CNT3066783Ficus caricaLeersia perrieri19.3242.0281.02137forward
CNT30649836Ficus caricaRosa chinensis59.5237.6182.7422forward
CNT30717283Ficus caricaMalus domestica golden34.1336.1283.88242forward
CNT30625244Ficus caricaDaucus carota52.3356.3879.25371forward
CNT30683148Ficus caricaTriticum urartu19.4625.685.51138forward
CNT30720854Ficus caricaTriticum spelta27.7929.0179.7197forward
CNT30349462Ficus caricaEragrostis tef35.1235.9881.12249forward
CNT30479170Ficus caricaArabidopsis halleri22.2837.3581.65158forward
CNT30363770Ficus caricaSorghum bicolor17.6323.9586.4125forward
CNT30622084Ficus caricaCajanus cajan51.4849.1379.45365forward
CNT30355098Ficus caricaLactuca sativa14.5327.8488.35103forward
CNT30154837Ficus caricaPrunus persica38.7929.8384.36275forward
CNT30433768Ficus caricaPapaver somniferum56.2827.2581.45399forward
CNT30571536Ficus caricaVitis vinifera33.7147.784.1239forward
CNT3026774Ficus caricaPopulus trichocarpa30.6126.1882.03217forward
CNT30120586Ficus caricaCitrus clementina30.6164.9782.49217forward
CNT3036222Ficus caricaCucumis melo22.4343.4486.79159forward
CNT30149185Ficus caricaBrachypodium distachyon10.7220.3886.8476forward
CNT30579988Ficus caricaEchinochloa crusgalli19.0442.0685.19135forward

Expression of CNT30113854

Peptides detected in this lncRNA

>peptide 1 (41 aa)
IAIYSSKETRFSSVLVVLDMKALGGTLSESGITLVGSKSRL*

>peptide 2 (72 aa)
MALRLRVASSSLCPPERNTIAGTAAGTVRSKVRTVYSAITSGATFLESDPGVTMLGFKRVPSRRTWWSFKAL*

>peptide 3 (76 aa)
MVVVQGLVDCSENALRHLSTLLNVMRHWRAPGAVKRSSRRARLFDSTFSTLMLERRFPIVPVDSSAARIPFPGVPM*

Sequence

>CNT30113854
ATCGCAATTTACTCGTCAAAAGAAACACGATTTTCTTCAGTACTTGTAGTCCTTGACATGAAGGCTCTCGGCGGCACCCTCAGTGAGAGTGGCATCACCC
TTGTAGGTTCCAAGAGTCGCCTCTGAGTTGGCCTTGCACCTGGCGAGGAAAGCAGCCTGGGCCTTGGGGATATTTTCCTCCTTTCCTGCCCACGCCTTGA
GGGTGCTCTGCTGGAGAGCTCGACCGAAGGAGAAGGAAAGCGACCACGGCTTCTTCGTCTTGAGCTTGTTCATGGCGTTGAGGTTAAGGGTAGCCTCCTC
TTCACTCTGCCCACCAGAGAGGAACACAATAGCAGGAACAGCAGCAGGCACGGTGCGCAGCAAGGTGCGAACGGTGTACTCAGCAATCACCTCTGGTGCA
ACCTTCTTGGAATCTGATCCAGGAGTGACCATGTTGGGCTTCAAAAGAGTTCCCTCAAGAAGGACATGGTGGTCGTTCAAGGCCTTGTAGACTGCAGCGA
GAACGCGCTCCGTCACCTCAGCACACTTCTCAATGTCATGAGGCATTGGAGAGCACCCGGGGCGGTGAAGAGGAGCTCACGCAGGGCACGCCTGTTCGAC
TCAACATTCTCTACATTGATGCTGGAGAGACGCTTTCCGATTGTGCCGGTCGACTCATCAGCCGCAAGGATACCCTTTCCAGGGGTTCCAATGTAAGTAG
CGTTGGCAA