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Detailed information on CNT30360524


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAG0|TBA2_GOSHI, E-value = 3e-133

BLAST vs NONCODE:
NONGMAT000219, E-value = 4e-20

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678671Lactuca sativaSetaria viridis50.740.0781.85325forward
CNT30521842Lactuca sativaSetaria italica51.0135.4381.65327forward
CNT30640127Lactuca sativaNymphaea colorata52.2641.9879.4335forward
CNT30533600Lactuca sativaEucalyptus grandis30.8952.9483.84198forward
CNT30377837Lactuca sativaArabidopsis thaliana37.2960.5180.75239forward
CNT3071007Lactuca sativaQuercus suber31.6739.7383.25203forward
CNT30379228Lactuca sativaManihot esculenta40.0929.4782.49257forward
CNT30403515Lactuca sativaBeta vulgaris31.6778.9980.3203forward
CNT30709081Lactuca sativaGlycine max30.2725.882.47194forward
CNT30294619Lactuca sativaTriticum aestivum31.6724.1183.74203forward
CNT30220716Lactuca sativaHordeum vulgare15.9144.7483.33102forward
CNT30394677Lactuca sativaTriticum turgidum39.7888.8582.35255forward
CNT30237104Lactuca sativaBrassica oleracea27.4654.3283.52176forward
CNT30439881Lactuca sativaAegilops tauschii38.6932.3381.05248forward
CNT30662251Lactuca sativaTriticum dicoccoides31.6729.9483.25203forward
CNT3075301Lactuca sativaBrassica juncea38.8546.8981.53249forward
CNT30611949Lactuca sativaArabis alpina11.0820.5290.1471forward
CNT30445136Lactuca sativaSaccharum spontaneum48.6744.3280.77312forward
CNT30136247Lactuca sativaLolium perenne14.3530.0784.7892forward
CNT301007Lactuca sativaZea mays50.5561.2581.79324forward
CNT3041150Lactuca sativaChlamydomonas reinhardtii25.1235.3183.85161forward
CNT30620135Lactuca sativaCajanus cajan26.8354.9586.05172forward
CNT30371316Lactuca sativaOryza glumipatula50.8627.6382.82326forward
CNT30570163Lactuca sativaVitis vinifera37.7529.2383.88242forward
CNT30106557Lactuca sativaOryza longistaminata19.558.4184125forward
CNT30148523Lactuca sativaBrachypodium distachyon39.9439.6983.98256forward
CNT30578286Lactuca sativaOryza barthii44.7729.982.93287forward
CNT30117847Lactuca sativaOryza nivara25.1217.1884.47161forward
CNT30174517Lactuca sativaVigna angularis14.5146.2786.0293forward
CNT30726259Lactuca sativaLupinus angustifolius37.7529.1984.71242forward
CNT3065151Lactuca sativaSelaginella moellendorffii15.9149.5186.27102forward
CNT3040082Lactuca sativaMarchantia polymorpha44.3167.6279.23284forward

Expression of CNT30360524

Peptides detected in this lncRNA

>peptide 1 (51 aa)
ATAAFTSLGTTSPLYIKQHAMYFPCLGSHFAIMEEGSKALLVISATESCSW*

>peptide 2 (35 aa)
MKWIRGYGTRFVWNSVTSTFRAPSKRRETRRLRLV*

>peptide 3 (41 aa)
RQQHSHPWEPRHLCTSNNMPCISHVWGRISPSWKKARKHCW*

>peptide 4 (45 aa)
DSSIHILGNHVTSVHQTTCHVFPMSGVAFRHHGRRLESTVGDFRD*

Sequence

>CNT30360524
GCGACAGCAGCATTCACATCCTTGGGAACCACGTCACCTCTGTACATCAAACAACATGCCATGTATTTCCCATGTCTGGGGTCGCATTTCGCCATCATGG
AAGAAGGCTCGAAAGCACTGTTGGTGATTTCCGCGACTGAGAGTTGCTCATGGTAAGCTTTTTCAGCTGAAATCACAGGTGCGTAAGAAGAAAGCATGAA
GTGGATACGTGGATATGGGACGAGATTTGTTTGGAATTCAGTCACGTCGACGTTCAGAGCACCGTCGAAGCGGAGGGAGACGAGACGGTTGAGGTTGGTG
TAGGTCGGGCGTTCGATGTCTAGTGACCGGCGGCAGATGTCGTAGATGGCTTCGTTGTCGAGGAGAATGGCGACGTCGGTGTGTTCGAGGAGAGAGTGGG
TGGATAAGACGCTGTTGTAGGGTTCGACTACCGATGTTGAGACTTGTGGAGATGGGTAGACGGTGAATCCGAGTTTTGACTTTTTTCCGTAGTCAACGGA
GAGACGTTCGAGGAGGAGGGAGCCGAGACCGGAGCCGGTACCACCTCCGACCGCGTTGAAGACGAGGAAGCCTTGGAGACCGGTGCAGTTGTCGGCGAGC
TTTCGGATGCGGTCGAGACAGAGGTCGACGATTTCTTTTCC