CANTATAdb - search

Detailed information on CNT30117821

BLAST search results

BLAST vs Swiss-Prot:
sp|Q53M52|TBA2_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONGMAT000219, E-value = 8e-35

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30547493	Oryza nivara	Ipomoea triloba	45.63	45.26	85.18	506	forward
CNT30372848	Oryza nivara	Arabidopsis thaliana	12.89	23.83	88.81	143	forward
CNT30709081	Oryza nivara	Glycine max	46.44	68.48	81.36	515	forward
CNT30177336	Oryza nivara	Secale cereale	46.26	44.76	88.69	513	forward
CNT30294619	Oryza nivara	Triticum aestivum	47.34	62.35	91.24	525	forward
CNT30237104	Oryza nivara	Brassica oleracea	25.34	86.73	82.92	281	forward
CNT30648424	Oryza nivara	Rosa chinensis	16.14	55.76	88.27	179	forward
CNT30720138	Oryza nivara	Triticum spelta	15.51	50	94.77	172	forward
CNT3024647	Oryza nivara	Populus trichocarpa	31.65	67.76	81.77	351	forward

Expression of CNT30117821

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MLPSTSLTEEGVKSIITSPNGLVTGHLSIRLH

>peptide 2 (57 aa)
RQTTHLDIKDATKKVHINNTGHSSESYKQTLHNRKANVFQNQTHKLIDRSPHGQIIG*

>peptide 3 (36 aa)
MSMRENTSTTLVELEIMHTALCTLARSPPGTTLGGW*

>peptide 4 (73 aa)
MPHLNPVGHQSTNWMVRFVLMVATAAFTSLGTTSPRYIRQHAMYLPWRGSHLAIMEDGSKALLVISATESCSW*

Sequence

>CNT30117821
CGACAAACCACTCACTTGGATATTAAAGATGCCACAAAGAAGGTTCACATAAACAACACAGGTCACAGCAGCGAAAGCTACAAGCAAACCCTGCATAATC
GAAAAGCAAATGTTTTTCAAAACCAGACACACAAACTGATAGATAGAAGCCCACACGGACAGATCATAGGATAGCAGCAGTAATCAAGCATTGCCAAGGC
ACCAGGCAAGAACCCTGAACCTCTCTAGTCGAACTTGATGTCGATGCGGGAGAACACCTCGACGACGCTGGTGGAGTTGGAGATCATGCACACGGCCCTC
TGCACCTTGGCCAGGTCTCCCCCCGGGACGACGCTGGGCGGCTGGTAGTTGATGCCGCACTTGAACCCCGTGGGGCACCAGTCCACGAACTGGATGGTGC
GCTTCGTCTTGATGGTGGCCACCGCGGCGTTCACGTCCTTGGGGACCACGTCGCCGCGGTACATCAGGCAGCACGCCATGTACTTGCCGTGGCGCGGGTC
GCACTTGGCCATCATGGAGGACGGCTCGAAGGCGCTGTTGGTGATCTCCGCCACGGAGAGCTGCTCGTGGTAGGCCTTCTCGGCCGAGATCACCGGGGCG
TAGGAGGAAAGCATGAAGTGGATCCTCGGGTAGGGCACCAGGTTGGTGTAGGTTGGGCGCTCAATGTCGAGGGAGCGGCGGCAGATGTCATAGATGGCCT
CATTGTCGAGCAAGACAGCGACATCGGTGTGCTCAAGGAGGGAGTGGGTGGAGACCTGAGGGGACGGGTACACGGTGAACCCGAGCTTGGACTTCTTGCC
ATAGTCCACAGAGAGACGCTCAAGGAGAAGGGAACCGAGACCGGAGCCCGTTCCTCCTCCAACAGCGTTGAACACAAGGAAGCCCTGGAGACCAGTGCAG
TTGTCGGCAAGCTTCCTGATGCGCTGCTCAGGGTGGAAGAGCTGGCGGTAGTCACCAGTCCTCACCTCATCAATCACGGTAGGCTCAAGATCGACGAAGA
CAGCACGGGGGACATGCTTCCCAGCACCAGTCTCACTGAAGAAGGTGTTAAAAGCATCATCACCTCCCCCAACGGTCTTGTCACCGGGCATCTGTCCATC
AGGCTGCAT