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Detailed information on CNT30609983


BLAST search results

BLAST vs Swiss-Prot:
sp|P27493|CB22_TOBAC, E-value = 6e-147

BLAST vs NONCODE:
NONMTRT001605, E-value = 7e-56

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30514354Gossypium raimondiiJuglans regia48.773.6881.89392forward
CNT30728214Gossypium raimondiiCorchorus capsularis60.8758.1990.61490forward
CNT30380511Gossypium raimondiiManihot esculenta55.6563.6484.38448forward
CNT30709894Gossypium raimondiiGlycine max58.6379.3384.11472forward
CNT3092178Gossypium raimondiiSolanum tuberosum58.5152.0486.62471forward
CNT30564070Gossypium raimondiiActinidia chinensis67.8363.8684.62546forward
CNT30539776Gossypium raimondiiBrassica napus44.171.2982.82355forward
CNT30237472Gossypium raimondiiBrassica oleracea44.144.9482.82355forward
CNT30313626Gossypium raimondiiCamelina sativa46.0932.1883.29371forward
CNT30263433Gossypium raimondiiBrassica rapa37.8968.2383.28305forward
CNT30202642Gossypium raimondiiHelianthus annuus41.3759.7882.58333forward
CNT30409978Gossypium raimondiiPapaver somniferum47.8340.3682.6385forward
CNT30176340Gossypium raimondiiVigna angularis53.0446.0181.5427forward

Expression of CNT30609983

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MVAHRKVDPSTKLGQDRTMGYQKEQAWWFSSWKHGQFPGFQGWKGRTSLPYRRMMGKKEPW*

>peptide 2 (43 aa)
METRPVPRISGVEGENFTALPANDGEERAMVVEAIVKQLILLVM

>peptide 3 (68 aa)
MDQAWVTQVVKSTLTEDLRPGLEPYSFAELDTVPSQQLRENTPKSSQHGPSAVNDFELTVPSKGLGIS*

>peptide 4 (40 aa)
MPLGHQQDPMGQSYHLGTMGQSLHRVVHRQYGNPRRLPSR*

Sequence

>CNT30609983
ACAAAATTCACATTCTGCTTTCATTGATTGTGCAACAAATTTACATTCACACCAACAAATAAAAACATGAACAAGACAAATCCCTTTTCACTCTCTAAGT
TCACTTTCCGGGGACAAAGTTGGTGGCATAGGCCCAAGCATTGTTGTTGACTGGCTCAGCGAATGCCTCTGGGTCATCAGCAAGACCCAATGGGTCAAAG
CTACCACCTGGGTACAATGGGTCAGTCACTTCACCGAGTGGTCCACCGGCAATACGGTAACCCTCGACGGCTCCCATCAAGATAACTTGGCAAGCCCAGA
TGGCCAAAATGCTTTGAGCATGGATCAAGCTTGGGTTACCCAAGTAGTCAAGTCCACCCTCACTGAAGATTTGAGACCCGGCCTTGAACCATACAGCTTC
GCCGAACTTGACACCGTTCCTAGCCAACAGCTCAGGGAAAACACACCCAAGAGCTCCCAACATGGCCCATCTGCAGTGAATGACTTCGAGCTCACGGTTC
CTAGCAAAGGTCTCGGGATCAGCTGAGAGTCCAGCAGTGTCCCAACCATAGTCACCAGGGAACTCACCGGTCAAGTAAGATGGTGGCTCACCGGAAAGTG
GACCCAAGTACAAAACTCGGTCAGGACCGTACCATGGGCTACCAGAAGGAACAGGCTTGGTGGTTTTCCTCATGGAAACACGGCCAGTTCCCCGGATTTC
AGGGGTGGAAGGGGAGAACTTCACTGCCTTACCGGCGAATGATGGGGAAGAAAGAGCCATGGTAGTAGAGGCCATTGTGAAGCAATTGATTTTGTTGGTG
ATGTG