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Detailed information on CNT30313761


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZ87|CB1B_ARATH, E-value = 5e-135

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30728214Camelina sativaCorchorus capsularis36.4836.2287.21305forward
CNT30629263Camelina sativaVigna unguiculata67.5854.9182.12565forward
CNT30263433Camelina sativaBrassica rapa46.1786.3592.49386forward
CNT30480878Camelina sativaArabidopsis halleri26.250.4694.98219forward
CNT30326027Camelina sativaAsparagus officinalis34.0950.0984.21285forward
CNT30336168Camelina sativaCynara cardunculus68.7856.7183.48575forward

Expression of CNT30313761

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MGCLMVPLAWQGRREPLLRQPLRLKCCTK*

>peptide 2 (29 aa)
MAHLLWITSSSRFLANVSGSAESPAVSHP*

>peptide 3 (48 aa)
MGQSCHRGKASPRPLPRDHLQRLCSLQRLPSRSLEWPRSPKCSERGPS*

>peptide 4 (53 aa)
DKSYKVFANFTSKQPLFLLSHTKQRLKQITDKTPLTFREQSWWRRPMRCLTMA*

Sequence

>CNT30313761
CGACAAATCATACAAAGTCTTTGCAAATTTTACATCTAAACAACCTCTCTTTCTCCTCTCACACACGAAGCAAAGACTGAAACAAATAACAGATAAAACT
CCGCTCACTTTCCGGGAACAAAGTTGGTGGCGAAGGCCCATGCGTTGTTTGACAATGGCTTGAACGAAGAATCCAAACATAGAGAACATAGCCAACCTAC
CGTTCTTGAGCTCCTTTACCTTCAACTCAGCGAAGGCCTCTGGGTCGGTAGCCAAACCCAATGGGTCAAAGCTGCCACCGGGGTAAAGCAAGTCCTCGGC
CTCTCCCAAGGGACCATCTCCAGCGACTCTGTAGCCTTCAACGGCTCCCATCAAGATCACTTGAGTGGCCCAGATCGCCAAAATGCTCTGAGCGTGGACC
AAGCTAGGGTTTCCCAAGTAATCGAGACCTCCATCGCTGAAGATTTGTGAGCCGGCCTTGAACCAAACGGCCTCTCCGAACTTGACTCCGTTCCTGGCCA
AAAGCTCAGGGAAGACGCAGCCAAGGGCTCCGAGCATGGCCCACCTGCTGTGGATAACTTCTAGCTCACGGTTCCTGGCGAATGTCTCGGGGTCAGCAGA
GAGTCCGGCGGTGTCCCATCCGTAGTCTCCGGGGAACTCTCCGGTAAGGTAGCTTGGTGATTCGCCGGAGAATGGGCCCAAGTACTTGACTCGGTCAGAT
CCGTACCATGGGCTGCCTGATGGTCCCTTTGGCTTGGCAGGGGAGGAGAGAGCCATTGTTGAGGCAGCCATTGCGGTTGAAGTGTTGCACAAAGTAAAAA
AAACGTTTAAGAGTTGTTGTTGTAGGCCAAGAAATG