Detailed information on CNT30507950


BLAST search results

BLAST vs Swiss-Prot:
sp|P07369|CB2G_SOLLC, E-value = 9e-134

BLAST vs NONCODE:
NONMTRT001605, E-value = 5e-62

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30728214Nicotiana attenuataCorchorus capsularis78.1250.4885.18425forward
CNT3046345Nicotiana attenuataPrunus dulcis47.7952.9588.46260forward
CNT30119285Nicotiana attenuataCitrus clementina97.4359.2886.04530forward

Expression of CNT30507950

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHLQWITSNSRFLANVSGSAESPAVSHP*

>peptide 2 (35 aa)
MFLDQLKVQQCPTHSHQGTHQSSSLGTLQRMDPST*

>peptide 3 (38 aa)
SSYDSLNEESKHGEHGKSAILDLLYLELSKSLWIISKA*

>peptide 4 (35 aa)
MENMASLPFLISFTLSSAKASGSSARPNGSKLPPG*

>peptide 5 (58 aa)
MDRSCHRGKVGQQPHQEAHQQHGNPQRLPSTQLGKPRWPRCFVHGPNLGCPSSQVHPR*

Sequence

>CNT30507950
TTCCAGTTACGATAGCCTGAACGAAGAATCCAAACATGGAGAACATGGCAAGTCTGCCATTCTTGATCTCCTTTACCTTGAGCTCAGCAAAAGCCTCTGG
ATCATCAGCAAGGCCTAATGGATCGAAGCTGCCACCGGGGTAAAGTGGGTCAACAACCTCACCAAGAGGCCCACCAGCAACACGGTAACCCTCAACGGCT
CCCATCAACACAACTTGGCAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAACTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAAATTT
GTGATCCAGCCTTGAACCATACAGCTTCGCCGAACTTGACACCGTTACGGGCCAAAAGCTCGGGGAAGACACAACCAAGAGCTCCAAGCATGGCCCATCT
GCAATGGATCACCTCCAATTCACGGTTCTTGGCAAATGTTTCTGGATCAGCTGAAAGTCCAGCAGTGTCCCACCCATAGTCACCAGGGAACTCACCAGTC
AAGTAGCTTGGGGACTCTCCAGAGAATGGACCCAAGTACTTGAC