Detailed information on CNT30263433


BLAST search results

BLAST vs Swiss-Prot:
sp|P13851|CB21_SINAL, E-value = 9e-94

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373848Brassica rapaArabidopsis thaliana87.0237.1590.49389forward
CNT30728214Brassica rapaCorchorus capsularis68.2336.2286.23305forward
CNT30539776Brassica rapaBrassica napus84.7976.194.99379forward
CNT30234343Brassica rapaBrassica oleracea87.0239.2597.94389forward
CNT30313761Brassica rapaCamelina sativa86.3546.1792.49386forward
CNT30609983Brassica rapaGossypium raimondii68.2337.8983.28305forward
CNT30217700Brassica rapaKalanchoe fedtschenkoi72.9341.3282.21326forward
CNT30202642Brassica rapaHelianthus annuus55.2644.3484.21247forward
CNT30480879Brassica rapaArabidopsis halleri42.0639.9293.62188forward
CNT30359492Brassica rapaLactuca sativa72.4837.8984.88324forward
CNT30337333Brassica rapaCynara cardunculus70.9245.0984.54317forward

Expression of CNT30263433

Peptides detected in this lncRNA

>peptide 1 (59 aa)
AATWVKQVLGLSQRPISCDSVAFNGSHQDHLSSPNSQDALSVNQARVSQVVKPSFAEDL*

>peptide 2 (32 aa)
SCHLGKASPRPLPTAHLLRLCSLQRLPSRSLE*

>peptide 3 (29 aa)
MAHLQWITSSSRFLANVSGSAERPAVSHP*

Sequence

>CNT30263433
AAGCTGCCACCTGGGTAAAGCAAGTCCTCGGCCTCTCCCAACGGCCCATCTCCTGCGACTCTGTAGCCTTCAACGGCTCCCATCAAGATCACTTGAGTAG
CCCAAATAGCCAAGATGCTCTGAGCGTGAACCAAGCTAGGGTTTCCCAAGTAGTCAAGCCCTCCTTCGCTGAAGATCTGTGAACCAGCCTTGAACCAAAC
CGCCTCTCCGAACTTGACTCCGTTCCTGGCCAACAACTCAGGGAAGACGCAGCCTAGGGCTCCGAGCATGGCCCACCTGCAGTGGATAACTTCTAGCTCA
CGGTTCCTTGCGAACGTCTCGGGATCGGCTGAGAGACCTGCGGTGTCCCATCCGTAGTCTCCTGGGAACTCTCCGGTAAGGTAGCTCGGCGGCCATTGCG
GTTGAGTGCTGAGCAAAATAAAACGTTTATTGGTTGTTGTTTGTGAG