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Detailed information on CNT30544801


BLAST search results

BLAST vs Swiss-Prot:
sp|P04778|CB1C_ARATH, E-value = 2e-170

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30728214Brassica napusCorchorus capsularis31.3133.1488.17279forward
CNT3055205Brassica napusAmborella trichopoda37.637.983.88335forward
CNT30337329Brassica napusCynara cardunculus34.5758.5685.06308forward

Expression of CNT30544801

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MGCLMDPLAWRRSSSLSHGRFQGPLMLKEKASRPFRRRQGRREPWLRQPLERFFFFVDFMGFF

>peptide 2 (37 aa)
KRGSISDESYKDTTKEIAQIYIGKTTNKLLFLWLSLT*

>peptide 3 (29 aa)
MAHLQWITSSSRFLAKVSGSADRPAVSHP*

>peptide 4 (64 aa)
MVGEILQRSLSSDNSLDKESKHREHSQPSVLDLLHLQLGESFWVGSETQWVEAASWDHLSSPNG*

Sequence

>CNT30544801
AAAAGAGGTTCGATTTCTGATGAATCATACAAAGATACGACAAAGGAAATTGCACAAATTTACATAGGAAAGACCACAAACAAACTTCTCTTTCTCTGGC
TCTCACTCACATAAGCTTCACTTTCCGGGGACGAAGTTGGTGGCGAAGGCCCATGCGTTGTTGTTGACTGGATCAGCCAAATGGTCGGCGAGATTCTCCA
ACGGTCCCTTTCCAGTGACAATAGCCTGGACAAAGAATCCAAACATAGAGAACATAGCCAACCTTCCGTTCTTGATCTCCTTCACCTTCAACTCGGCGAA
AGCTTCTGGGTCGGTAGCGAGACCCAATGGGTCGAAGCTGCCTCCTGGGATCACCTGAGTAGCCCAAATGGCTAAGATGCTCTGAGCGTGGACCAAGCTC
GGGTTGCCCAAGTAGTCGAGTCCTCCTTCACTGAAGATCTGTGAACCGGCCTTGAACCAAACCGCTTCTCCGAACTTGACTCCGTTACGAGCCAAGAGCT
CAGGGAAAACGCAGCCTAGGGCTCCGAGCATGGCCCACCTGCAGTGGATAACTTCTAGCTCACGGTTCCTGGCGAAGGTCTCGGGGTCGGCTGATAGACC
GGCGGTGTCCCATCCGTAGTCACCGGGGAACTCTCCGGTAAGGTAGCTTGGTGGCTCGCCGGAGAATGGACCTAGGTACTTGACTCTTTCGGAACCGTAC
CATGGGCTGCCTGATGGACCCTTTGGCTTGGCGACGGTCTTCCTCATTGTCACACGGCCGCTTCCAAGGACCTCTGATGCTGAAGGAGAAAGCTTCACGG
CCTTTCCGGCGAAGGCAGGGGAGGAGAGAGCCATGGTTGAGGCAGCCATTAGAACGTTTCTTCTTTTTTGTTGATTTTATGGGTTTTTTTT