« Back to Corylus avellana search


Detailed information on CNT30316082


BLAST search results

BLAST vs Swiss-Prot:
sp|P09756|CB23_SOYBN, E-value = 6e-178

BLAST vs NONCODE:
NONBNAT007398, E-value = 7e-109

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641326Corylus avellanaNymphaea colorata63.8354.3483.36607forward
CNT30534416Corylus avellanaEucalyptus grandis70.5659.5984.8671forward
CNT30616124Corylus avellanaSesamum indicum68.6657.2387.14653forward
CNT30728214Corylus avellanaCorchorus capsularis45.3251.1985.61431forward
CNT30633494Corylus avellanaCapsicum annuum69.1971.9984.95658forward
CNT3091778Corylus avellanaSolanum tuberosum69.1971.7685.41658forward
CNT30541860Corylus avellanaBrassica napus55.7387.1782.08530forward
CNT30234343Corylus avellanaBrassica oleracea61.4158.9382.36584forward
CNT30508800Corylus avellanaSolanum lycopersicum69.1970.5384.65658forward
CNT3079851Corylus avellanaBrassica juncea62.9958.2782.64599forward
CNT30725349Corylus avellanaLupinus angustifolius83.9177.4883.46798forward

Expression of CNT30316082

Peptides detected in this lncRNA

>peptide 1 (72 aa)
QRFRGEVLQVIHILCNFEEKSFTGSQYLRLTFRGRSLWRKPRHCCLLGRQGGQRGSPMAPFQSQWPEQRTQT*

>peptide 2 (40 aa)
METRPTPSSGVDGATCTALPANDGEERAIVEAAIVELRLE*

>peptide 3 (31 aa)
MGQSFHLGRWGPSPHRVAHRQYGNPQQHPSR*

>peptide 4 (29 aa)
MAHLEWMTSSSRFFAKVSGSAESPAVSQP*

Sequence

>CNT30316082
TCAGAGATTCAGAGGAGAAGTACTACAGGTAATTCACATTTTGTGCAATTTTGAGGAGAAAAGCTTCACGGGGTCTCAATATCTCCGGCTCACTTTCCGG
GGACGAAGTTTGTGGCGTAAGCCCAGGCATTGTTGTTTACTGGGTCGGCAAGGTGGTCAGCGAGGTTCTCCAATGGCCCCTTTCCAGTCACAATGGCCTG
AACAAAGAACCCAAACATAGAGAACATAGCCAATCTTCCATTCTTGAGCTCCTTCACCTTAAGCTCAGCAAAAGCTTCCGGGTCATCAGCAAGACCCAAT
GGGTCAAAGCTTCCACCTGGGTAGATGGGGTCCGTCACCTCACCGAGTGGCCCACCGGCAATACGGTAACCCTCAACAGCACCCATCAAGATGACCTGAG
TTGCCCAGATGGCCAGAATGCTTTGCGCGTGGACCAAGCTCGGGTTGCCCAAGTAGTCAAGACCGCCTTCGCTGAAGATCTGAGCTCCGGCCTTGAACCA
CACGGCCTCGCCGAACTTGACGCCGTTCCGGGACAAGAGCTCCGGGAAGACGCACCCGAGGGCTCCAAGCATGGCCCATCTGGAGTGGATGACTTCCAGC
TCACGGTTCTTTGCAAAGGTCTCTGGGTCGGCTGAAAGCCCTGCAGTGTCCCAGCCATAGTCACCGGGGAATTCTCCAGTAAGGTAGGATGGGGGCTCAC
CGGAGAATGGGCCCAAGTACTTGACACGGTCAGGGCCGTACCATGGGCTGCCGGAGGAAGCCTGCTTGAAGGCTGTTTTCCTCATGGAGACACGTCCAAC
ACCAAGCTCCGGGGTTGACGGAGCAACCTGCACCGCCTTGCCGGCAAATGATGGGGAAGAGAGAGCCATTGTTGAAGCAGCCATTGTAGAATTGAGGTTA
GAATAGAGAAAGAGACAGCAATGCAAGGGAAGGAGTGATCGATGGGTGTTT