Detailed information on CNT30262244


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30501219Brassica rapaCoffea canephora26.7325.5586.4281reverse complement
CNT3069056Brassica rapaQuercus suber27.397.8590.3683forward
CNT30379183Brassica rapaManihot esculenta22.7724.389.8669reverse complement
CNT30404033Brassica rapaBeta vulgaris24.7524.2789.3375forward
CNT30526655Brassica rapaPhaseolus vulgaris23.132.269070forward
CNT30506278Brassica rapaNicotiana attenuata26.7326.7386.4281forward
CNT3095958Brassica rapaSolanum tuberosum20.1320.1390.1661forward
CNT30561829Brassica rapaActinidia chinensis27.7223.5391.6784forward
CNT30542706Brassica rapaBrassica napus100100100303forward
CNT30236426Brassica rapaBrassica oleracea10010094.72303forward
CNT30508652Brassica rapaSolanum lycopersicum27.3927.385.5483forward
CNT30313675Brassica rapaCamelina sativa96.3798.6586.99292reverse complement
CNT30647270Brassica rapaRosa chinensis27.3927.0495.1883forward
CNT30715507Brassica rapaMalus domestica golden28.3827.8391.8686forward
CNT30572342Brassica rapaVitis vinifera28.0515.2689.4185reverse complement
CNT3029804Brassica rapaTheobroma cacao27.0626.7189.0282forward
CNT30726065Brassica rapaLupinus angustifolius20.7920.4592.0663forward

Expression of CNT30262244

Peptides detected in this lncRNA

>peptide 1 (45 aa)
SSSVTSACNPCGDDKLVEHWLGQQVGFDVALFWAARSKLRVVCVC*

>peptide 2 (40 aa)
MREAGFTEQRSPPSLSSGWITAQRHSYPSWPAGSYPAELPS

Sequence

>CNT30262244
GTCGAGCTCAGTAACGAGTGCTTGTAACCCATGTGGGGATGATAAGTTGGTAGAACACTGGCTCGGCCAACAGGTCGGATTTGATGTGGCACTGTTCTGG
GCTGCCCGATCCAAGCTGAGAGTGGTCTGTGTGTGCTGAGCGAAAGCTTCGCGCGGACGGTTCCTAAAGTGGAGGGCAATGCGTGAGGCTGGTTTCACAG
AGCAGCGATCACCTCCCTCTCTCAGCAGTGGATGGATAACGGCTCAACGCCACTCATATCCATCATGGCCTGCTGGCTCGTACCCAGCTGAACTACCATC
TTT