Detailed information on CNT30648233


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30703316Rosa chinensisQuercus lobata23.7823.7894.5273forward
CNT30727290Rosa chinensisCorchorus capsularis28.6628.8589.7788forward
CNT3069056Rosa chinensisQuercus suber23.136.7292.9671forward
CNT3044357Rosa chinensisPrunus dulcis50.1650.6688.96154forward
CNT30294286Rosa chinensisTriticum aestivum22.4822.7791.369forward
CNT30437909Rosa chinensisAegilops tauschii21.521.8590.9166forward
CNT30668729Rosa chinensisTriticum dicoccoides20.5221.6592.0663forward
CNT3015222Rosa chinensisZea mays25.7326.6987.3479forward
CNT30210362Rosa chinensisHelianthus annuus37.4637.4685.22115forward
CNT30714975Rosa chinensisMalus domestica golden45.646.9888.57140reverse complement
CNT30688275Rosa chinensisTriticum urartu20.5221.6592.0663forward
CNT30319113Rosa chinensisAsparagus officinalis24.769.4488.1676reverse complement
CNT30724529Rosa chinensisLupinus angustifolius24.124.2687.8474forward

Expression of CNT30648233

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MTQARALNRWNNGSAHPAGLNLCDLLTRPFQVVGWALWFRLRPGLRGP*

>peptide 2 (93 aa)
PSYVALAYDSSEGIKPLEQRVGPPCRVEFVRSADPPIPSCGLGLVVQAKAWAAWPLERRAKREAGFTEQRKPPAHNSGRITGLCTVNPYCLVG*

Sequence

>CNT30648233
GCCGAGCTATGTAGCGCTAGCTTATGACTCAAGCGAGGGCATTAAACCGTTGGAACAACGGGTCGGCCCACCCTGCAGGGTTGAATTTGTGCGATCTGCT
GACCCGCCCATTCCAAGTTGTGGGTTGGGCCTTGTGGTTCAGGCTAAGGCCTGGGCTGCGTGGCCCTTAGAGAGGAGGGCAAAGCGTGAGGCTGGTTTCA
CAGAGCAGCGAAAACCGCCCGCCCACAACAGTGGAAGGATAACGGGTTTGTGCACTGTCAACCCATATTGCTTGGTGGGCTGACCTGGTTGAACCACTTT
TTTTTTT