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Detailed information on CNT30410045


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316252Papaver somniferumCorylus avellana25.6821.4789.4776forward
CNT30518096Papaver somniferumJuglans regia21.6218.5590.6264forward
CNT30703316Papaver somniferumQuercus lobata22.6421.8291.0467reverse complement
CNT30373911Papaver somniferumArabidopsis thaliana20.6120.491.861forward
CNT30501219Papaver somniferumCoffea canephora22.6421.1488.0667forward
CNT3069056Papaver somniferumQuercus suber25789.1974reverse complement
CNT30406606Papaver somniferumBeta vulgaris22.6421.6892.5467reverse complement
CNT30526769Papaver somniferumPhaseolus vulgaris23.6523.819070reverse complement
CNT30632205Papaver somniferumVigna unguiculata20.959.9788.7162reverse complement
CNT30506771Papaver somniferumNicotiana attenuata22.6421.9791.0467reverse complement
CNT30708521Papaver somniferumGlycine max22.6422.0488.0667reverse complement
CNT3044614Papaver somniferumPrunus dulcis22.6417.8292.5467reverse complement
CNT30634223Papaver somniferumCapsicum annuum21.2821.5892.0663forward
CNT3096300Papaver somniferumSolanum tuberosum23.3122.789.8669reverse complement
CNT30566737Papaver somniferumActinidia chinensis2529.7291.8974forward
CNT3084708Papaver somniferumVigna radiata20.9520.3993.5562reverse complement
CNT30541676Papaver somniferumBrassica napus20.2719.6793.3360reverse complement
CNT30235726Papaver somniferumBrassica oleracea20.2719.6193.3360reverse complement
CNT30509042Papaver somniferumSolanum lycopersicum23.9923.290.1471reverse complement
CNT30172978Papaver somniferumTrifolium pratense22.321.5792.4266reverse complement
CNT30143823Papaver somniferumMedicago truncatula20.2719.0591.6760reverse complement
CNT3076575Papaver somniferumBrassica juncea26.6925.1687.3479reverse complement
CNT30261746Papaver somniferumBrassica rapa20.2725.5391.6760reverse complement
CNT30612154Papaver somniferumArabis alpina22.9722.3791.1868forward
CNT30232760Papaver somniferumAnanas comosus22.314.4787.8866reverse complement
CNT30204216Papaver somniferumHelianthus annuus21.6220.9290.6264reverse complement
CNT30154450Papaver somniferumPrunus persica22.6421.9791.0467reverse complement
CNT3029804Papaver somniferumTheobroma cacao20.2719.549060reverse complement
CNT3058749Papaver somniferumAmborella trichopoda19.5921.2591.3858reverse complement
CNT3026903Papaver somniferumPopulus trichocarpa23.9923.3692.9671reverse complement
CNT30176071Papaver somniferumVigna angularis22.6421.4189.5567reverse complement
CNT30724636Papaver somniferumLupinus angustifolius23.3122.7789.8669reverse complement

Expression of CNT30410045

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MQPTPNLERASQHSVHTSTYQVKPDQCSTTLKSPLGLQARAT

>peptide 2 (45 aa)
KVVVQLTRLTRMSWNWGTSARNPSTVKSGRCSLLCETSLTQCPPL*

Sequence

>CNT30410045
AAAAGTGGTTGTTCAACTGACTCGGCTCACCAGGATGAGTTGGAACTGGGGCACATCGGCTCGTAATCCTTCCACTGTCAAGAGCGGGAGGTGTTCGTTG
CTCTGTGAAACCAGCCTGACGCAGTGCCCTCCGCTATAGTGATAGCACAGCCCAAGCCTTCGCCCGGACAATGCAACCAACTCCCAACTTGGAACGGGCG
AGTCAACATAGCGTGCACACCAGCACCTACCAGGTGAAACCCGACCAGTGTTCAACCACCTTGAAGTCCCCACTTGGGTTACAAGCTCGCGCGACC