Detailed information on CNT30542706


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3069056Brassica napusQuercus suber27.397.8590.3683forward
CNT30379183Brassica napusManihot esculenta22.7724.389.8669reverse complement
CNT30404033Brassica napusBeta vulgaris24.7524.2789.3375forward
CNT30506278Brassica napusNicotiana attenuata26.7326.7386.4281forward
CNT3095958Brassica napusSolanum tuberosum20.1320.1390.1661forward
CNT30262244Brassica napusBrassica rapa100100100303forward
CNT30715507Brassica napusMalus domestica golden28.3827.8391.8686forward
CNT30572342Brassica napusVitis vinifera28.0515.2689.4185reverse complement

Expression of CNT30542706

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MREAGFTEQRSPPSLSSGWITAQRHSYPSWPAGSYPAELPS

>peptide 2 (45 aa)
SSSVTSACNPCGDDKLVEHWLGQQVGFDVALFWAARSKLRVVCVC*

Sequence

>CNT30542706
GTCGAGCTCAGTAACGAGTGCTTGTAACCCATGTGGGGATGATAAGTTGGTAGAACACTGGCTCGGCCAACAGGTCGGATTTGATGTGGCACTGTTCTGG
GCTGCCCGATCCAAGCTGAGAGTGGTCTGTGTGTGCTGAGCGAAAGCTTCGCGCGGACGGTTCCTAAAGTGGAGGGCAATGCGTGAGGCTGGTTTCACAG
AGCAGCGATCACCTCCCTCTCTCAGCAGTGGATGGATAACGGCTCAACGCCACTCATATCCATCATGGCCTGCTGGCTCGTACCCAGCTGAACTACCATC
TTT