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Detailed information on CNT30238127


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547627Brassica oleraceaIpomoea triloba23.617.1288.8972reverse complement
CNT30727290Brassica oleraceaCorchorus capsularis25.925.989.8779forward
CNT3069056Brassica oleraceaQuercus suber22.956.6291.4370forward
CNT30526253Brassica oleraceaPhaseolus vulgaris27.5427.6388.184forward
CNT30629861Brassica oleraceaVigna unguiculata26.5617.0988.8981forward
CNT30561829Brassica oleraceaActinidia chinensis26.8922.9791.4682forward
CNT3086859Brassica oleraceaVigna radiata26.5626.8291.3681forward
CNT30538764Brassica oleraceaBrassica napus100100.6698.69305forward
CNT30172978Brassica oleraceaTrifolium pratense23.2823.288.7371forward
CNT30143579Brassica oleraceaMedicago truncatula22.9523.19070forward
CNT30264180Brassica oleraceaBrassica rapa100100.9994.75305forward
CNT30647270Brassica oleraceaRosa chinensis26.8926.7195.1282forward
CNT30212741Brassica oleraceaHelianthus annuus34.4335.1283.81105forward
CNT30623316Brassica oleraceaDaucus carota25.925.9987.3479forward
CNT30619930Brassica oleraceaCajanus cajan23.2811.8190.1471forward
CNT30409088Brassica oleraceaPapaver somniferum21.9720.4992.5467reverse complement
CNT3024649Brassica oleraceaPopulus trichocarpa22.9523.1891.4370forward
CNT30120686Brassica oleraceaCitrus clementina34.7535.2286.79106reverse complement
CNT30174907Brassica oleraceaVigna angularis26.5626.5691.3681forward
CNT30725324Brassica oleraceaLupinus angustifolius26.5640.390.1281forward

Expression of CNT30238127

Peptides detected in this lncRNA

>peptide 1 (41 aa)
SSSVARACDLCGDNKMVEHWPGPTGRICCGMFWAVPGPSRE*

>peptide 2 (40 aa)
MREAGFTEQRSPPSLDSGRITAQSHSDPAWSGGSYPAEPPS

Sequence

>CNT30238127
GTCGAGCTCAGTAGCGAGAGCTTGTGACCTATGTGGGGACAATAAGATGGTGGAACACTGGCCCGGGCCCACAGGTCGGATCTGTTGTGGCATGTTCTGG
GCTGTGCCCGGTCCAAGCCGAGAGTGATCCGTGTGTGCTGAGCGAAGGCTTGGCTCAGGCGGTTCCTAAAGAGGAGGGCAATGCGTGAGGCTGGTTTCAC
AGAGCAGCGATCACCTCCCTCTCTCGACAGTGGACGGATAACAGCTCAAAGCCACTCAGATCCAGCATGGTCTGGTGGCTCGTACCCAGCTGAACCACCA
TCTTT