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Detailed information on CNT3059454


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547627Arabidopsis lyrataIpomoea triloba25.417.6288.3177reverse complement
CNT30703316Arabidopsis lyrataQuercus lobata22.7722.4891.369forward
CNT30372997Arabidopsis lyrataArabidopsis thaliana10041.7997.03303forward
CNT30618136Arabidopsis lyrataSesamum indicum22.1111.7892.5467reverse complement
CNT3069056Arabidopsis lyrataQuercus suber22.776.5389.8669forward
CNT30379183Arabidopsis lyrataManihot esculenta23.432590.1471reverse complement
CNT30404033Arabidopsis lyrataBeta vulgaris23.122.659070forward
CNT30526655Arabidopsis lyrataPhaseolus vulgaris24.7534.5690.6775forward
CNT30711674Arabidopsis lyrataGlycine max24.7524.6789.3375forward
CNT30158859Arabidopsis lyrataPistacia vera24.0925.4490.4173reverse complement
CNT30634223Arabidopsis lyrataCapsicum annuum20.7921.5888.8963reverse complement
CNT30561829Arabidopsis lyrataActinidia chinensis21.4518.2193.8565forward
CNT3084405Arabidopsis lyrataVigna radiata27.7227.9186.984forward
CNT30544072Arabidopsis lyrataBrassica napus97.3697.6890.51295forward
CNT30237764Arabidopsis lyrataBrassica oleracea10010089.44303forward
CNT30313675Arabidopsis lyrataCamelina sativa97.6910092.57296reverse complement
CNT3081558Arabidopsis lyrataBrassica juncea97.6936.9590.88296reverse complement
CNT30264180Arabidopsis lyrataBrassica rapa97.3697.6890.51295forward
CNT30232760Arabidopsis lyrataAnanas comosus24.7516.4589.3375forward
CNT30647270Arabidopsis lyrataRosa chinensis22.1121.8294.0367forward
CNT30714946Arabidopsis lyrataMalus domestica golden22.1111.5394.0367reverse complement
CNT30477933Arabidopsis lyrataArabidopsis halleri10010096.7303forward
CNT30154450Arabidopsis lyrataPrunus persica27.7227.5485.7184forward
CNT30409088Arabidopsis lyrataPapaver somniferum23.121.4191.4370reverse complement
CNT30572342Arabidopsis lyrataVitis vinifera22.1112.0391.0467reverse complement
CNT3058191Arabidopsis lyrataAmborella trichopoda23.122.89070forward
CNT3024632Arabidopsis lyrataPopulus trichocarpa24.7524.7589.3375forward
CNT30318775Arabidopsis lyrataAsparagus officinalis33.6620.9484.31102reverse complement
CNT30726065Arabidopsis lyrataLupinus angustifolius24.4224.0391.8974forward

Expression of CNT3059454

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MREAGFTEQRSPPALSSGWITARRHSDSPWPAGSFPAGPPI

>peptide 2 (39 aa)
SSSVARACDPSGDNRLVEHWLGPRVGSVVALFRAAQSKL*

Sequence

>CNT3059454
GTCGAGCTCAGTAGCGAGGGCTTGTGACCCAAGTGGGGACAATAGGTTGGTGGAACACTGGCTCGGCCCACGGGTCGGATCTGTTGTGGCATTGTTTCGG
GCTGCCCAGTCCAAGCTGTGAGTGATCCGTGTGTGTTAAGCGAAGGCTTGGCTCAGGCGGTTCCTGCAGTGGAGGGCAATGCGTGAGGCTGGTTTCACAG
AGCAGCGATCACCTCCCGCTCTCAGCAGTGGATGGATCACAGCTCGACGCCACTCAGATTCACCATGGCCTGCTGGCTCGTTCCCAGCTGGACCACCAAT
TTT