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Detailed information on CNT30145967


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515285Medicago truncatulaJuglans regia41.8416.2582.93123forward
CNT30703316Medicago truncatulaQuercus lobata44.94384.85132forward
CNT3069056Medicago truncatulaQuercus suber46.9413.0683.33138forward
CNT30382680Medicago truncatulaManihot esculenta49.3247.8582.07145forward
CNT30526651Medicago truncatulaPhaseolus vulgaris51.3650.6788.74151forward
CNT30632205Medicago truncatulaVigna unguiculata46.9422.1986.96138forward
CNT30711418Medicago truncatulaGlycine max52.7250.9985.81155forward
CNT3048431Medicago truncatulaPrunus dulcis23.4717.9786.9669forward
CNT30587366Medicago truncatulaMusa acuminata25.5120.1186.6775forward
CNT3086859Medicago truncatulaVigna radiata54.4252.9886.88160forward
CNT30172405Medicago truncatulaTrifolium pratense34.3544.4993.07101forward
CNT30261746Medicago truncatulaBrassica rapa21.4326.8188.8963forward
CNT30214836Medicago truncatulaHelianthus annuus49.3246.7783.45145forward
CNT3029804Medicago truncatulaTheobroma cacao21.7720.8589.0664forward
CNT30121042Medicago truncatulaCitrus clementina23.4722.9288.4169reverse complement
CNT30723394Medicago truncatulaLupinus angustifolius51.365086.75151forward

Expression of CNT30145967

Peptides detected in this lncRNA

>peptide 1 (55 aa)
LSWVASTCHPCGSTKVLGHGYGLLGWAGFCNMLACPLQVESWATGFGRRPWSLGS*

>peptide 2 (43 aa)
MAMACWAGLVSAICWLALSKLRVGPRDLGEGLGLLVPRREGTA*

Sequence

>CNT30145967
GCTGAGTTGGGTAGCGTCAACTTGTCACCCATGTGGGAGCACTAAAGTATTGGGACATGGCTATGGCTTGTTGGGCTGGGCTGGTTTCTGCAATATGTTG
GCTTGCCCTCTCCAAGTTGAGAGTTGGGCCACGGGATTTGGGCGAAGGCCTTGGTCTCTTGGTTCCTAGACGAGAGGGCACTGCGTGAGGCTGGTTTCGC
AGAGCAGCGAAGACCTCTGGCTCTTGACAGTGGAGGGATAACAAGCTGCAGCAGTTCTAAGCTTGGTGAGCCTAGCCTTTGAACCATAACTTTT