Detailed information on CNT30477933


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547627Arabidopsis halleriIpomoea triloba25.417.6288.3177reverse complement
CNT30703316Arabidopsis halleriQuercus lobata22.7722.4891.369forward
CNT30372997Arabidopsis halleriArabidopsis thaliana10041.7995.71303forward
CNT30618136Arabidopsis halleriSesamum indicum22.1111.7892.5467reverse complement
CNT3069056Arabidopsis halleriQuercus suber22.776.5389.8669forward
CNT30526655Arabidopsis halleriPhaseolus vulgaris24.7534.5690.6775forward
CNT30158859Arabidopsis halleriPistacia vera24.0925.4490.4173reverse complement
CNT30634223Arabidopsis halleriCapsicum annuum20.7921.5888.8963reverse complement
CNT30561829Arabidopsis halleriActinidia chinensis21.4518.2193.8565forward
CNT3084405Arabidopsis halleriVigna radiata27.7227.9186.984forward
CNT30538923Arabidopsis halleriBrassica napus10010089.44303forward
CNT30237764Arabidopsis halleriBrassica oleracea10010089.44303forward
CNT30313675Arabidopsis halleriCamelina sativa97.6910092.57296reverse complement
CNT3059454Arabidopsis halleriArabidopsis lyrata10010096.7303forward
CNT3081558Arabidopsis halleriBrassica juncea97.6936.9589.53296reverse complement
CNT30264180Arabidopsis halleriBrassica rapa97.3697.6889.83295forward
CNT30232760Arabidopsis halleriAnanas comosus24.7516.4590.6775forward
CNT30647270Arabidopsis halleriRosa chinensis22.1121.8294.0367forward
CNT30714946Arabidopsis halleriMalus domestica golden22.1111.5394.0367reverse complement
CNT30154450Arabidopsis halleriPrunus persica27.7227.5485.7184forward
CNT30409088Arabidopsis halleriPapaver somniferum23.121.4191.4370reverse complement
CNT30572433Arabidopsis halleriVitis vinifera20.7911.4390.4863reverse complement
CNT3029804Arabidopsis halleriTheobroma cacao27.7227.3686.984forward
CNT3058191Arabidopsis halleriAmborella trichopoda23.122.89070forward
CNT3024632Arabidopsis halleriPopulus trichocarpa24.7524.7589.3375forward
CNT30318775Arabidopsis halleriAsparagus officinalis33.6620.9484.31102reverse complement
CNT30726065Arabidopsis halleriLupinus angustifolius24.4224.0391.8974forward

Expression of CNT30477933

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MREAGFTEQRSPPALSSGRITARRHSDSPWPAGSFPAGPPI

>peptide 2 (39 aa)
SSSVARACDLSGDNKLVEHWIGPQVGSVVALFRAAQSKL*

Sequence

>CNT30477933
GTCGAGCTCAGTAGCGAGGGCTTGTGACCTAAGTGGGGACAATAAGTTGGTGGAACACTGGATCGGTCCACAGGTTGGATCTGTTGTGGCATTGTTCCGG
GCTGCCCAGTCCAAGCTGTGAGTGATCCGTGTGAGTGAAGCGAAGGCTTGGCTCAGGCGGTTCCTGCAGTGGAGGGCAATGCGTGAGGCTGGTTTCACAG
AGCAGCGATCACCTCCCGCTCTCAGCAGTGGACGGATCACAGCTCGACGCCACTCAGATTCACCATGGCCTGCTGGCTCGTTCCCAGCTGGACCACCAAT
TTT