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Detailed information on CNT30651308


BLAST search results

BLAST vs Swiss-Prot:
sp|P29302|PSAD_NICSY, E-value = 3e-84

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695521Rosa chinensisOryza sativa30.0322.5880.35173forward
CNT30677834Rosa chinensisSetaria viridis24.3129.5482.14140forward
CNT30522550Rosa chinensisSetaria italica24.3129.4182.14140forward
CNT30639185Rosa chinensisNymphaea colorata39.4153.1682.38227forward
CNT30315306Rosa chinensisCorylus avellana26.3925.0880.26152forward
CNT30403648Rosa chinensisBeta vulgaris24.3112.6288.57140forward
CNT30525887Rosa chinensisPhaseolus vulgaris20.1431.0285.34116forward
CNT30630495Rosa chinensisVigna unguiculata38.7239.3384.75223forward
CNT30505774Rosa chinensisNicotiana attenuata33.5140.3887.05193forward
CNT30710306Rosa chinensisGlycine max56.7752.8380.43327forward
CNT30298930Rosa chinensisTriticum aestivum27.0818.7782.69156forward
CNT30395284Rosa chinensisTriticum turgidum27.0822.6782.69156forward
CNT3089114Rosa chinensisVigna radiata38.1922.8783.64220forward
CNT30554655Rosa chinensisOryza glaberrima30.0319.7780.35173forward
CNT30171560Rosa chinensisTrifolium pratense24.6517.6285.21142forward
CNT30145699Rosa chinensisMedicago truncatula22.424.4886.82129forward
CNT30440464Rosa chinensisAegilops tauschii27.0818.881.41156forward
CNT30246994Rosa chinensisAvena sativa22.415.4583.72129forward
CNT30666088Rosa chinensisTriticum dicoccoides27.0819.4582.69156forward
CNT30611231Rosa chinensisArabis alpina27.4327.4881.01158forward
CNT30971Rosa chinensisZea mays27.4327.7281.65158forward
CNT30215427Rosa chinensisHelianthus annuus19.130.8181.82110forward
CNT30344027Rosa chinensisEragrostis tef21.3515.2282.11123forward
CNT30477818Rosa chinensisArabidopsis halleri26.5632.6981.7153forward
CNT30596768Rosa chinensisOryza meridionalis30.0322.0980.35173forward
CNT30370811Rosa chinensisOryza glumipatula30.0321.8780.35173forward
CNT30577354Rosa chinensisOryza barthii30.0321.0580.35173forward
CNT30579578Rosa chinensisEchinochloa crusgalli26.3918.4782.89152forward
CNT30117312Rosa chinensisOryza nivara30.0321.9580.35173forward

Expression of CNT30651308

Peptides detected in this lncRNA

>peptide 1 (85 aa)
NEPTDDHNHMSYTCFPVNLTSIGFTFFPMDLKLSPTPWRPGFTFSGAKHCSFLASFNKLGPSLMMAAPPVGISKICSLGDSQVIT*

>peptide 2 (36 aa)
MGLGAAVERVSDFGAMKVEVTDCFHGAEAVGVKRVA*

Sequence

>CNT30651308
AAATGAACCAACTGATGATCATAATCATATGTCATACACTTGCTTCCCGGTGAACTTGACCTCAATTGGGTTCACATTCTTCCCAATGGACCTGAAGTTA
AGCCCCACTCCTTGGCGCCCTGGGTTCACCTTCTCAGGAGCCAAACACTGCTCTTTCCTGGCCAGCTTCAACAAGTTAGGTCCTTCCCTCATGATGGCTG
CACCACCAGTTGGCATCTCAAAGATTTGCTCCTTGGGTGATTCCCAGGTGATCACGTAGAACTCTTCCTCTTGGGCCTTGCGGAGAAGCCCACCGGTGCT
GCCGCCGAAGATTGGGGATGGGGTTGTTGGGTCCAGTTCCGGCGGGGTGAAGCCAACCGGAGCTTCGGCCTCCTTTGTGGGTGCCACGGTTTTCTCTTCA
GCAGCTGCGATCCTCATGGGTCTTGGCGCTGCGGTGGAGAGGGTCAGTGACTTTGGGGCCATGAAGGTGGAGGTGACTGACTGTTTCCATGGTGCTGAGG
CGGTTGGGGTGAAGAGGGTCGCTTGAGTTGCCATGGCCATGACTTTGGGCAGGGAGAGAGAAGAGACGGAGAGTTG