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Detailed information on CNT30577354


BLAST search results

BLAST vs Swiss-Prot:
sp|P36213|PSAD_HORVU, E-value = 4e-97

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695521Oryza barthiiOryza sativa75.1880.6899.35618forward
CNT30678303Oryza barthiiSetaria viridis23.7254.7893.85195forward
CNT30522020Oryza barthiiSetaria italica34.4359.794.7283forward
CNT30639185Oryza barthiiNymphaea colorata37.7172.683.87310forward
CNT30515273Oryza barthiiJuglans regia33.8243.3780.22278forward
CNT30525887Oryza barthiiPhaseolus vulgaris11.3124.8786.0293forward
CNT30630495Oryza barthiiVigna unguiculata36.3752.7381.61299forward
CNT30710333Oryza barthiiGlycine max38.5636.4482.65317forward
CNT30122581Oryza barthiiPhyscomitrium patens19.2222.4182.28158forward
CNT30299532Oryza barthiiTriticum aestivum28.3545.6994.85233forward
CNT30395090Oryza barthiiTriticum turgidum54.1441.492.13445forward
CNT3089114Oryza barthiiVigna radiata33.3328.4881.75274forward
CNT30440464Oryza barthiiAegilops tauschii54.1453.6192.58445forward
CNT30246994Oryza barthiiAvena sativa51.8251.0292.96426forward
CNT30665756Oryza barthiiTriticum dicoccoides44.451.4192.88365forward
CNT30446699Oryza barthiiSaccharum spontaneum30.928.3292.52254forward
CNT30971Oryza barthiiZea mays36.0151.9392.23296forward
CNT30228866Oryza barthiiAnanas comosus28.5926.8988.09235forward
CNT30651308Oryza barthiiRosa chinensis21.0530.0380.35173forward
CNT30344027Oryza barthiiEragrostis tef48.7849.6393.52401forward
CNT30361538Oryza barthiiSorghum bicolor32.655.2692.16268forward
CNT30619829Oryza barthiiCajanus cajan38.5632.1584.23317forward
CNT30596794Oryza barthiiOryza meridionalis54.8768.0297.78451forward
CNT30356274Oryza barthiiLactuca sativa38.6948.7778.93318forward
CNT30370923Oryza barthiiOryza glumipatula82.680.5596.61679forward
CNT3035037Oryza barthiiCucumis melo11.5631.6786.3295forward
CNT30148662Oryza barthiiBrachypodium distachyon38.6941.390.57318forward
CNT30579362Oryza barthiiEchinochloa crusgalli52.5549.5493.52432forward
CNT30499040Oryza barthiiDigitaria exilis25.5530.8890.95210forward
CNT30117441Oryza barthiiOryza nivara76.474.5899.84628forward
CNT30174623Oryza barthiiVigna angularis31.5130.481.08259forward
CNT30558912Oryza barthiiPanicum hallii8.1526.0795.5267forward
CNT30113105Oryza barthiiFicus carica38.4439.587.34316forward
CNT3049718Oryza barthiiCucumis sativus23.4836.9780.83193forward

Expression of CNT30577354

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MAMVVGGGERSVPCGGFDSSGVVWRRWSREKPKKKRGEMGEEVDKGI*

>peptide 2 (37 aa)
MSKTFLPVNLTSMGLTFLPMLRKFWPTPCLPALTFSG*

Sequence

>CNT30577354
AATATTATAAGAAGAGATTATATCCCACCATCGATCGATTACACCATCATCAATAACTGAAGAGCAGCCTGACAGATGATTAAAATTACATGTCCATCCA
CCCAAAACACAAGTAATTAATAGGTCGATTATGAGAGAAGAAGAAGAAGGAGAAGTCTAGATGTCGAAGACGTTCTTGCCGGTGAACTTGACCTCGATGG
GGCTGACGTTCTTGCCGATGCTGCGGAAGTTCTGGCCGACGCCCTGCCTGCCGGCGTTGACCTTCTCCGGGTAGACGCCGTCCTTGGGGTGGAGGTACTG
CACCTCGCCATTGGGGAAGACGCGGTAGAACTGGTAGTTGATCTTGTACTTGGAGCGGAGCCTGGTGCCCAGGGCCAGGCACTGCTCCTTCCTGGCCAGC
TTCAGCAGGTTGGGGCCCTCGCGCATGATGGCGGCGCCGCCCGTGGGCATCTCGAACACCTGCTCCTTGGGCGACGTCCATGTGATGACGTAGAACTCCT
CCACCTGCGCCTTCCGGAGGAGTCCCCCCGTGCTCCCGCCGAAGATCGGGGACGGCGTGTTGGGGTCCAGCTGCGGCGGCACGAACCCCGCGGGGGCTGG
CTTCTTCTCCTCCGTCGCCGCCGCGGCGAGGAGGTGGCACTTGGCGGCGGAGGCTTGCGTGGCCATGGCCATGGTGGTCGGAGGAGGAGAGAGGAGTGTA
CCGTGTGGTGGATTCGATTCGAGTGGTGTGGTGTGGAGGAGATGGAGTAGAGAAAAGCCCAAGAAGAAGAGAGGGGAAATGGGTGAGGAAGTGGATAAGG
GGATATGAGGTTGGCCAATGGC