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Detailed information on CNT30971


BLAST search results

BLAST vs Swiss-Prot:
sp|P36213|PSAD_HORVU, E-value = 7e-72

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695521Zea maysOryza sativa51.9338.6492.23296forward
CNT30522550Zea maysSetaria italica54.2164.9295.79309forward
CNT30639185Zea maysNymphaea colorata48.4264.6482.61276forward
CNT30630495Zea maysVigna unguiculata45.6145.8680.38260forward
CNT3089114Zea maysVigna radiata45.4426.9280.69259forward
CNT30554655Zea maysOryza glaberrima51.9333.8392.23296forward
CNT30440464Zea maysAegilops tauschii51.2335.1891.44292forward
CNT30246994Zea maysAvena sativa51.2334.9793.15292forward
CNT30446699Zea maysSaccharum spontaneum56.3235.7995.33321forward
CNT30651308Zea maysRosa chinensis27.7227.4381.65158forward
CNT30361538Zea maysSorghum bicolor49.8258.5694.72284forward
CNT30619829Zea maysCajanus cajan46.4926.8883.4265forward
CNT30596768Zea maysOryza meridionalis4029.1290.79228forward
CNT30370811Zea maysOryza glumipatula51.9337.4292.23296forward
CNT30577354Zea maysOryza barthii51.9336.0192.23296forward
CNT30579356Zea maysEchinochloa crusgalli54.2135.8593.53309forward
CNT30117312Zea maysOryza nivara51.9337.5692.23296forward
CNT30113105Zea maysFicus carica48.634.6287277forward

Expression of CNT30971

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MHISNHATTVPAAKLQYTVINRRRSSLIWIPAGACGVREV*

>peptide 2 (34 aa)
NIRRDLVIKLHKDHHAHLKSCHHRTSSQITIYCN*

>peptide 3 (32 aa)
YKKRLGNKITQGSSCTSQIMPPPYQQPNYNIL*

Sequence

>CNT30971
AATATAAGAAGAGACTTGGTAATAAAATTACACAAGGATCATCATGCACATCTCAAATCATGCCACCACCGTACCAGCAGCCAAATTACAATATACTGTA
ATTAATAGAAGAAGAAGTTCTTTAATTTGGATCCCGGCTGGGGCGTGCGGCGTACGTGAAGTGTGATTAGTCGAAGGTGGCCTTGCCGGTGAACTTGACG
TCGATGGGGTACTGCACCTCGCCGTTGGGGAAGACGCGGTAGAACTGGTAGGTGATCTTGTACTTGGAGCGCAACCTGGTGCCGAGCGCCAGGCACTGCT
CCTTGCGCGCCAGCTTCAAGAGGTTGGGGCCCTCCCGCATGATGGCGGCGCCGCCGGTGGGCATCTCGAACACCTGCTCCTTGGGGGACGTCCACGTGAT
GACGTAGAACTCCTCCACCTGCGCCTTGCGGAGCAGCCCGCCCGTGCTGCCGCCGAAGATCGGGGACGGCGTGCTGGGGTCCAGCTGCGGGGCCACGAAC
CCCTTGGGCGCCTCCACCGCCTCCTCGGTGGACGCGCGGAGCGGGGCCGGCCCGCGGGAGGACGACGACG