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Detailed information on CNT30677834


BLAST search results

BLAST vs Swiss-Prot:
sp|P36213|PSAD_HORVU, E-value = 2e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695265Setaria viridisOryza sativa38.6126.4192.9183forward
CNT30377112Setaria viridisArabidopsis thaliana21.115.7283100forward
CNT30525887Setaria viridisPhaseolus vulgaris18.1422.9987.2186forward
CNT30630495Setaria viridisVigna unguiculata33.9728.481.99161forward
CNT30710271Setaria viridisGlycine max34.632.9382.93164forward
CNT3089114Setaria viridisVigna radiata33.9716.7483.85161forward
CNT30446699Setaria viridisSaccharum spontaneum44.0923.395.69209forward
CNT30990Setaria viridisZea mays71.7344.190.59340forward
CNT30651308Setaria viridisRosa chinensis29.5424.3182.14140forward
CNT30361778Setaria viridisSorghum bicolor41.7727.0594.95198forward
CNT30596768Setaria viridisOryza meridionalis41.3525.0391.84196forward
CNT30356274Setaria viridisLactuca sativa31.4322.8583.89149forward
CNT3035037Setaria viridisCucumis melo17.327.3385.3782forward
CNT30148465Setaria viridisBrachypodium distachyon32.4919.8592.86154forward
CNT30579578Setaria viridisEchinochloa crusgalli41.1423.6994.87195forward
CNT3049718Setaria viridisCucumis sativus33.7630.6581.25160forward

Expression of CNT30677834

Peptides detected in this lncRNA

>peptide 1 (35 aa)
IYICFHASPPRSPRKPDYSNKITYRSTLHQPPNTS*

>peptide 2 (37 aa)
MSKVFLPVNLTSMGLTFLPMLRKFCPTPCLPALTFSG*

>peptide 3 (52 aa)
FTYVSMHHLHDHQENLIIVIKLHIDRPSINHPTPAKRKRWMRSLRCRRCSCR*

Sequence

>CNT30677834
ATTTACATATGTTTCCATGCATCACCTCCACGATCACCAAGAAAACCTGATTATAGTAATAAAATTACATATCGATCGACCCTCCATCAACCACCCAACA
CCAGCTAAGAGAAAGAGATGGATGAGATCACTTAGATGTCGAAGGTGTTCTTGCCGGTGAACTTGACCTCGATGGGGCTGACGTTCTTGCCGATGCTGCG
GAAGTTCTGCCCCACGCCCTGCCTGCCGGCGTTGACCTTCTCCGGGTAGACGCCGTCCTTGGGGTGGAGGTTGGGCCCCTCCCGCATGATGGCGGCGCCG
CCCGTCGGCATCTCGAACACCTGCTCCTTGGGGGACGTCCACGTGATCACGTAGAACTCCTCCACCTGCGCCTTCCGGAGCAGCCCGCCCGTGCTGCCGC
CGAAGATCGGGGACGGGGTGTTGGGGTCAAGCTGCGGGGGCACGAACCCCTTGGGCGCCTCCTGGGTCGCCGCC