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Detailed information on CNT30117312


BLAST search results

BLAST vs Swiss-Prot:
sp|P36213|PSAD_HORVU, E-value = 3e-97

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678303Oryza nivaraSetaria viridis24.7554.7893.85195forward
CNT30522020Oryza nivaraSetaria italica35.9159.794.7283forward
CNT30639185Oryza nivaraNymphaea colorata39.3472.683.87310forward
CNT30515273Oryza nivaraJuglans regia35.2843.3780.22278forward
CNT30630495Oryza nivaraVigna unguiculata37.9452.7381.61299forward
CNT30710333Oryza nivaraGlycine max40.2336.4482.65317forward
CNT30122581Oryza nivaraPhyscomitrium patens20.0522.4182.28158forward
CNT30299532Oryza nivaraTriticum aestivum29.5745.6994.85233forward
CNT30395090Oryza nivaraTriticum turgidum56.4741.492.13445forward
CNT3089114Oryza nivaraVigna radiata34.7728.4881.75274forward
CNT30440464Oryza nivaraAegilops tauschii56.4753.6192.58445forward
CNT30246994Oryza nivaraAvena sativa54.0651.0292.96426forward
CNT30665756Oryza nivaraTriticum dicoccoides46.3251.4192.88365forward
CNT30446699Oryza nivaraSaccharum spontaneum32.2328.3292.52254forward
CNT30971Oryza nivaraZea mays37.5651.9392.23296forward
CNT30228866Oryza nivaraAnanas comosus29.8226.8988.09235forward
CNT30651308Oryza nivaraRosa chinensis21.9530.0380.35173forward
CNT30344027Oryza nivaraEragrostis tef50.8949.6393.52401forward
CNT30361538Oryza nivaraSorghum bicolor34.0155.2692.16268forward
CNT30619829Oryza nivaraCajanus cajan40.2332.1584.23317forward
CNT30356274Oryza nivaraLactuca sativa40.3648.7778.93318forward
CNT30370811Oryza nivaraOryza glumipatula93.9193.5598.78740forward
CNT30148662Oryza nivaraBrachypodium distachyon40.3641.390.57318forward
CNT30579362Oryza nivaraEchinochloa crusgalli54.8249.5493.52432forward
CNT30499040Oryza nivaraDigitaria exilis26.6530.8890.95210forward
CNT30174623Oryza nivaraVigna angularis32.8730.481.08259forward
CNT30113105Oryza nivaraFicus carica40.139.587.34316forward
CNT3049718Oryza nivaraCucumis sativus24.4936.9780.83193forward

Expression of CNT30117312

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MSKTFLPVNLTSMGLTFLPMLRKFWPTPCLPALTFSG*

>peptide 2 (29 aa)
THQNSPNIYYNIIRRDYIPPSIDYTIINN*

>peptide 3 (32 aa)
MAMVVGGGERRVPCGRFDSSGVVWRREISEME*

Sequence

>CNT30117312
CACGCATCAAAATTCACCAAACATATACTACAATATTATAAGAAGAGATTATATCCCACCATCGATCGATTACACCATCATCAATAACTGAAGAGCAGCC
TGACAGATGATTAAAATTACATGTCCATCCACCCAAAACACAAGTAATTAATAGGTCGATTATGAGAGAAGAAGAAGAAGAAGAAGTCTAGATGTCGAAG
ACGTTCTTGCCGGTGAACTTGACCTCGATGGGGCTGACGTTCTTGCCGATGCTGCGGAAGTTCTGGCCGACGCCCTGCCTGCCGGCGTTGACCTTCTCCG
GGTAGACGCCGTCCTTGGGGTGGAGGTACTGCACCTCGCCATTGGGGAAGACGCGGTAGAACTGGTAGTTGATCTTGTACTTGGAGCGGAGCCTGGTGCC
CAGGGCCAGGCACTGCTCCTTCCTGGCCAGCTTCAGCAGGTTGGGGCCCTCGCGCATGATGGCGGCGCCGCCCGTGGGCATCTCGAACACCTGCTCCTTG
GGCGACGTCCATGTGATGACGTAGAACTCCTCCACCTGCGCCTTCCGGAGGAGTCCCCCCGTGCTCCCGCCGAAGATCGGGGACGGCGTGTTGGGGTCCA
GCTGCGGCGGCACGAACCCCGCGGGGGCTGGCTTGCGTGGCCATGGCCATGGTGGTCGGAGGAGGAGAGAGGAGGGTACCGTGTGGTAGATTCGATTCGA
GTGGTGTGGTGTGGAGGAGAGAGATATCGGAGATGGAGTAAGAAGAAGAGAGGGGAAATGGGTGAGGAAGTGGATAAGGGGATATGAG