« Back to Nymphaea colorata search


Detailed information on CNT30639185


BLAST search results

BLAST vs Swiss-Prot:
sp|P12372|PSAD_SOLLC, E-value = 1e-79

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695521Nymphaea colorataOryza sativa72.640.4783.87310forward
CNT30678303Nymphaea colorataSetaria viridis37.4744.9483.12160forward
CNT30522550Nymphaea colorataSetaria italica64.1757.5682.12274forward
CNT30515273Nymphaea colorataJuglans regia61.5941.0383.27263forward
CNT30376473Nymphaea colorataArabidopsis thaliana58.5535.6181.6250forward
CNT30269143Nymphaea colorataChenopodium quinoa59.4832.6978.35254forward
CNT30380725Nymphaea colorataManihot esculenta59.0242.7184.52252forward
CNT30403648Nymphaea colorataBeta vulgaris48.2418.5883.01206forward
CNT30525887Nymphaea colorataPhaseolus vulgaris25.7629.4185.45110forward
CNT30630495Nymphaea colorataVigna unguiculata72.8354.8582.96311forward
CNT30505774Nymphaea colorataNicotiana attenuata59.0252.7279.37252forward
CNT30710333Nymphaea colorataGlycine max72.3735.5286.08309forward
CNT30122581Nymphaea colorataPhyscomitrium patens36.321.9982.58155forward
CNT30298930Nymphaea colorataTriticum aestivum34.1917.5781.51146forward
CNT30395090Nymphaea colorataTriticum turgidum68.6227.2679.52293forward
CNT3089114Nymphaea colorataVigna radiata6327.9682.9269forward
CNT30554655Nymphaea colorataOryza glaberrima72.635.4383.87310forward
CNT30145740Nymphaea colorataMedicago truncatula72.1338.2679.55308forward
CNT30440464Nymphaea colorataAegilops tauschii68.6235.378.84293forward
CNT30246994Nymphaea colorataAvena sativa68.6235.0980.89293forward
CNT30665756Nymphaea colorataTriticum dicoccoides60.1936.279.77257forward
CNT3061459Nymphaea colorataArabidopsis lyrata57.1441.6482.38244forward
CNT30446699Nymphaea colorataSaccharum spontaneum54.826.0983.76234forward
CNT30971Nymphaea colorataZea mays64.6448.4282.61276forward
CNT30228866Nymphaea colorataAnanas comosus35.1317.1683.33150forward
CNT30651308Nymphaea colorataRosa chinensis53.1639.4182.38227forward
CNT30344027Nymphaea colorataEragrostis tef67.9235.8982.76290forward
CNT30477818Nymphaea colorataArabidopsis halleri42.6238.8982.97182forward
CNT30361778Nymphaea colorataSorghum bicolor55.7432.5183.19238forward
CNT30619829Nymphaea colorataCajanus cajan72.631.4483.87310forward
CNT30596794Nymphaea colorataOryza meridionalis44.7328.8183.77191forward
CNT30356274Nymphaea colorataLactuca sativa65.8143.181.14281forward
CNT30370811Nymphaea colorataOryza glumipatula72.639.1983.87310forward
CNT30148662Nymphaea colorataBrachypodium distachyon48.9527.1478.95209forward
CNT30577354Nymphaea colorataOryza barthii72.637.7183.87310forward
CNT30579362Nymphaea colorataEchinochloa crusgalli72.635.5583.23310forward
CNT30117312Nymphaea colorataOryza nivara72.639.3483.87310forward
CNT30174623Nymphaea colorataVigna angularis40.5220.3183.82173forward
CNT30113105Nymphaea colorataFicus carica64.434.3885.45275forward
CNT3049718Nymphaea colorataCucumis sativus72.135979.87308forward

Expression of CNT30639185

Peptides detected in this lncRNA

>peptide 1 (70 aa)
LLRVNTILGMKVLHLPIRKDPVKLVVDLVLGPQPGAQGQALLLPRKLQQVRPLPHDGRTPCGHLKDLLLW*

>peptide 2 (36 aa)
MGEGVLGSNSGGVKPTGASSTAALITRRDGAAGGGI*

Sequence

>CNT30639185
ACCTTCTCAGGGTAAACACCATCCTTGGGATGAAGGTACTGCACCTCCCCATTAGGAAAGACCCTGTAAAATTGGTAGTTGATCTTGTACTTGGACCTCA
GCCTGGTGCCCAAGGCCAAGCACTGCTCCTTCCTCGCAAGCTTCAACAGGTTAGGCCCCTGCCTCATGATGGCCGCACCCCCTGTGGGCATCTCAAAGAT
CTGCTCCTTTGGTGAGTCCCATGTAATGACATAGAACTCCTCCACCTGCGCCTTGCGCAGCAGCCCTCCCGTGCTCCCTCCAAAGATGGGGGAAGGAGTG
TTGGGGTCCAATTCCGGCGGTGTGAAGCCGACTGGAGCTTCCTCCACGGCAGCTTTGATCACGAGGCGGGATGGAGCGGCAGGGGGCGGAATATGAGTTG
GGGAGGGGAAGGAGAAGAAGGAGAAGG