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Detailed information on CNT30596768


BLAST search results

BLAST vs Swiss-Prot:
sp|P36213|PSAD_HORVU, E-value = 5e-91

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695265Oryza meridionalisOryza sativa61.4369.4194.18481forward
CNT30677834Oryza meridionalisSetaria viridis25.0341.3591.84196forward
CNT30525887Oryza meridionalisPhaseolus vulgaris11.8824.8786.0293forward
CNT30630495Oryza meridionalisVigna unguiculata24.3933.6982.2191forward
CNT30299761Oryza meridionalisTriticum aestivum42.7886.1289.85335forward
CNT30393705Oryza meridionalisTriticum turgidum53.1345.7189.42416forward
CNT3089114Oryza meridionalisVigna radiata24.0119.5482.45188forward
CNT30665641Oryza meridionalisTriticum dicoccoides51.9853.4189.93407forward
CNT30446699Oryza meridionalisSaccharum spontaneum28.6124.9791.52224forward
CNT30971Oryza meridionalisZea mays29.124090.79228forward
CNT30651308Oryza meridionalisRosa chinensis22.0930.0380.35173forward
CNT30361778Oryza meridionalisSorghum bicolor28.7430.7490.67225forward
CNT30358483Oryza meridionalisLactuca sativa18.3922.0284.03144forward
CNT3035037Oryza meridionalisCucumis melo12.1331.6785.2695forward
CNT30148465Oryza meridionalisBrachypodium distachyon52.8753.3585.02414forward
CNT30577551Oryza meridionalisOryza barthii78.5471.6895.28615forward
CNT30579413Oryza meridionalisEchinochloa crusgalli52.4944.2991411forward
CNT30558912Oryza meridionalisPanicum hallii8.5626.0795.5267forward
CNT3049718Oryza meridionalisCucumis sativus24.6536.9780.31193forward

Expression of CNT30596768

Peptides detected in this lncRNA

>peptide 1 (29 aa)
NEHASKFTKHILQYYKEEIISHHRSITPS*

>peptide 2 (37 aa)
MSKTFLPVNLTSMGLTFLPMLRKFWPTPCLPALTFSG*

>peptide 3 (30 aa)
MNTHQNSPNIYYNIIKKRLYPTIDRLHHHE*

Sequence

>CNT30596768
TAATGAACACGCATCAAAATTCACCAAACATATACTACAATATTATAAAGAAGAGATTATATCCCACCATCGATCGATTACACCATCATGAATAACTGAA
GAGCAGCCTGACAGATGATTAAAATTACATGTCCATCCACCCAAAACACAAGTAATTAATAGGTCGATTACGAGAGAAGAAGAAGAAGTCTAGATGTCGA
AGACGTTCTTGCCGGTGAACTTGACCTCGATGGGGCTGACGTTCTTGCCGATGCTGCGGAAGTTCTGGCCGACGCCCTGCCTGCCGGCGTTGACCTTCTC
CGGGTAGACGCCGTCCTTGGGGTGGAGGTACTGCACCTCGCCATTGGGGAAGACGCGATAGAACTGGTAGTTGATCTTGCACTGCTCCTTCCTGGCCAGC
TTCAGCAGGTTGGGGCCCTCGCGCATGATGGCGGCGCCGCCCGTGGGCATCTCGAACACCTGCTCCTTGGGCGACGTCCATGTGATGACGTAGAACTCCT
CCACCTGCGCCTTCCGGAGGAGGCCCCCCGTGCTCCCGCCGAAGATCGGGGACGGCGTGTTGGGGTCCAGCTGCGGCGGCACGAACCCCGCGGGGGCCTC
CTCCGCTGCCGCTCTGAGGGAGGTGGGTGCCCTCGAGGAGGAGGAGGTGGCGCGTGGCGGCGGAGGCTTGCGTGGCCATGGCCATGGTGGTGGGAGGAGG
GTACCGTGTGGTGGATTCGATTCGAGTGGAGGAGAGAGAGATATCGGAGATGGAGTAGAGAAAAGCCCAAGAAAAAGAGAGGG