« Back to Setaria italica search


Detailed information on CNT30522550


BLAST search results

BLAST vs Swiss-Prot:
sp|P36213|PSAD_HORVU, E-value = 7e-92

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639185Setaria italicaNymphaea colorata57.5664.1782.12274forward
CNT30377112Setaria italicaArabidopsis thaliana21.0115.7283100forward
CNT30525887Setaria italicaPhaseolus vulgaris18.0722.9987.2186forward
CNT30630495Setaria italicaVigna unguiculata53.9945.3380.54257forward
CNT30710271Setaria italicaGlycine max57.7755.2282.18275forward
CNT3089114Setaria italicaVigna radiata57.5628.4881.75274forward
CNT30971Setaria italicaZea mays64.9254.2195.79309forward
CNT30651308Setaria italicaRosa chinensis29.4124.3182.14140forward
CNT30361778Setaria italicaSorghum bicolor88.6657.6591.94422forward
CNT30619829Setaria italicaCajanus cajan57.5627.7984.67274forward
CNT30356274Setaria italicaLactuca sativa31.322.8583.89149forward
CNT3035037Setaria italicaCucumis melo17.2327.3385.3782forward
CNT30579356Setaria italicaEchinochloa crusgalli88.6648.9696.45422forward
CNT30558912Setaria italicaPanicum hallii14.0826.0798.5167forward
CNT30113105Setaria italicaFicus carica57.3534.1286.81273forward
CNT3049718Setaria italicaCucumis sativus33.6130.6581.25160forward

Expression of CNT30522550

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MSKVFLPVNLTSMGLTFLPMLRKFCPTPCLPALTFSGYWTSPLGKTR*

Sequence

>CNT30522550
GACCCTCCATCAACCACCCAACACCAGCTAAGAGAAAGAGATGGATGAGATCACTTAGATGTCGAAGGTGTTCTTGCCGGTGAACTTGACCTCGATGGGG
CTGACGTTCTTGCCGATGCTGCGGAAGTTCTGCCCCACGCCCTGCCTGCCGGCGTTGACCTTCTCCGGGTACTGGACCTCGCCGTTGGGGAAGACGCGGT
AGAACTGGTAGTTGATCTTGTACTTGGAGCGCAGCCTGGTGCCGAGCGCCAGGCACTGCTCCTTGCGCGCCAGCTTCAGGAGGTTGGGCCCCTCCCGCAT
GATGGCGGCGCCGCCCGTCGGCATCTCGAACACCTGCTCCTTGGGGGACGTCCACGTGATCACGTAGAACTCCTCCACCTGCGCCTTCCGGAGCAGCCCG
CCCGTGCTGCCGCCGAAGATCGGGGACGGGGTGTTGGGGTCAAGCTGCGGGGGCACGAACCCCTTGGGCGCCTCCT