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Detailed information on CNT30171560


BLAST search results

BLAST vs Swiss-Prot:
sp|P32869|PSAD_CUCSA, E-value = 3e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515406Trifolium pratenseJuglans regia28.4145.0882.53229forward
CNT30371945Trifolium pratenseArabidopsis thaliana27.5451.6383.78222forward
CNT30269143Trifolium pratenseChenopodium quinoa29.6530.7682.85239forward
CNT30380146Trifolium pratenseManihot esculenta37.123.3480.27299forward
CNT30403648Trifolium pratenseBeta vulgaris29.6521.5582.85239forward
CNT30525887Trifolium pratensePhaseolus vulgaris1736.6380.29137forward
CNT30630495Trifolium pratenseVigna unguiculata38.5954.8581.03311forward
CNT30197643Trifolium pratensePisum sativum11.1740.5492.2290forward
CNT30488386Trifolium pratenseOlea europaea22.3324.4282.78180forward
CNT30505774Trifolium pratenseNicotiana attenuata23.9540.3884.46193forward
CNT30710271Trifolium pratenseGlycine max23.738.3584.82191forward
CNT3094391Trifolium pratenseSolanum tuberosum14.3926.5485.34116forward
CNT3089114Trifolium pratenseVigna radiata35.2429.5280.63284forward
CNT30145793Trifolium pratenseMedicago truncatula57.5776.5785.99464forward
CNT3061459Trifolium pratenseArabidopsis lyrata27.7938.2381.7224forward
CNT30651308Trifolium pratenseRosa chinensis17.6224.6585.21142forward
CNT30477818Trifolium pratenseArabidopsis halleri24.0741.4581.44194forward
CNT30619829Trifolium pratenseCajanus cajan25.5620.8981.07206forward
CNT30358694Trifolium pratenseLactuca sativa25.5646.2983.5206forward
CNT30411270Trifolium pratensePapaver somniferum37.2253.4884.67300forward
CNT30725909Trifolium pratenseLupinus angustifolius1622.9584.5129forward
CNT3049718Trifolium pratenseCucumis sativus28.2943.6885.53228forward

Expression of CNT30171560

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MKHHPLHIIRMQILNLPIRENPVKLILNLVL*

>peptide 2 (42 aa)
LVYNAITTCGRPCGTSMIDPNKSTLYTIIIYYILLLIKAKAD*

>peptide 3 (29 aa)
MVVNLMGLSDMKDKVDGCFHGFGLELPLP*

Sequence

>CNT30171560
CTCGTATACAATGCAATAACCACTTGCGGTAGACCTTGTGGTACATCGATGATCGATCCTAATAAAAGTACGCTGTATACTATTATTATATACTATATAC
TATTACTAATAAAAGCTAAAGCAGATTAATATTCATTCCAAAAACTAACATAAGCTTCACAAAAGTAGTCAACATGATAAAATTAAATACACAGGTAAAT
TGTTTAGCATTTGTCACATAAATAAATGTGATCATAAGTACATGCATTACATACGAAATTAATGAAGCACCATCCCTTACACATCATAAGGATGCAAATA
TTGAACCTCCCCATTAGGGAAAACCCTGTAAAACTGATACTTAATCTTGTACTTTGATCTTAATCTAGTTCCTAAAGCCAAACACTGTTCTTTCCTAGCC
AATTTAAGAAGATTAGGACCTTCCCTCATTATAGCAGCACCACCAGTTGGCATTTCAAAGATTTGTTCTTTAGGTGATTCCCATGTGATTACATAGAATT
CTTCAACTTGGGCCTTACGCAATAATCCACCAGTACTTCCTCCAAAAATTGGAGAAGGTGTATTTGGATCTAACTCAGGTGGGGTGAATCCAACTGGTGC
AGTTTTTTCTTCTTTTGTTGCTACTGCTGCTTCTTCTGGTTCAGCTTTTCCATCTGCTGCAGCTGAGATTTTTGTTATTTTTGGTGAAATGGTTGTGAAT
TTGATGGGTTTGAGTGATATGAAAGATAAAGTTGATGGTTGTTTCCATGGTTTTGGACTTGAGTTGCCATTGCCATGATGAATGAATGAATGTTATGATG
ATGAAT