Detailed information on CNT30611231


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SA56|PSAD2_ARATH, E-value = 2e-76

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377112Arabis alpinaArabidopsis thaliana58.0952.5284.13334forward
CNT30197643Arabis alpinaPisum sativum13.3934.6884.4277forward
CNT30505774Arabis alpinaNicotiana attenuata21.7426.1581.6125forward
CNT30145699Arabis alpinaMedicago truncatula22.2624.2985.16128forward
CNT3061459Arabis alpinaArabidopsis lyrata30.9630.3891.01178forward
CNT30651308Arabis alpinaRosa chinensis27.4827.4381.01158forward
CNT30477824Arabis alpinaArabidopsis halleri30.7853.1589.83177forward
CNT30358483Arabis alpinaLactuca sativa27.4824.1681.65158forward
CNT30410573Arabis alpinaPapaver somniferum29.9119.1382.56172forward
CNT30113105Arabis alpinaFicus carica30.9622.2579.21178forward
CNT3049718Arabis alpinaCucumis sativus22.0924.3382.68127forward

Expression of CNT30611231

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MQILNFSIRKHSVKLLLLLASQRFVLLVSSM*

Sequence

>CNT30611231
CGACTGATATAAAAAACCTTACAAATCATAAGATTGTTTCCCAGTGAATTTAACTTCAATAGGACTAACATTTTTCCCAATAGATCTCATGTTTAGTCCA
ACACCTTCTCTTCCTGGATTTGCTTTCTCTGGATAAACACCATCTTTAGGATGCAAATACTGAACTTCTCCATTAGGAAACACTCTGTAAAACTGCTCCT
CCTGTTGGCATCTCAAAGATTTGTTCTTTTGGTGAGTTCCATGTGATTACATAGAATTCTTCTACTTGAGCTTTACGTAGAAGACCTCCGGTGCTTCCGG
CGAAGATTGGTGACGGTGTGTTAGGGTCTAGCTGCGGCGGAGTGAATCCAACCGGAGCTTCTTTCACGGTGGCGGAAGAAGCAGAGGACTCTGTTTTCTC
CGCGCGGATTGCGGTTTTGGTGAAGGTGAGAGATTTTGGACGGTGGGATGTTGTGAAGAAGTTGAGTCTCTTCACGGCGGAAGCGGTGGTTGTTACGGCG
GGGCTGAAGATTCCGGCTGCTTGTGCTGCCATTTTTTTTCCTTTCTCTAAAAATACTGTTTTTTGGTGTGTAAAT