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Detailed information on CNT30579578


BLAST search results

BLAST vs Swiss-Prot:
sp|P36213|PSAD_HORVU, E-value = 5e-77

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677834Echinochloa crusgalliSetaria viridis23.6941.1494.87195forward
CNT30377112Echinochloa crusgalliArabidopsis thaliana16.2821.0781.34134forward
CNT30525887Echinochloa crusgalliPhaseolus vulgaris10.8123.884.2789forward
CNT30298930Echinochloa crusgalliTriticum aestivum44.1143.6888.15363forward
CNT30249341Echinochloa crusgalliAvena sativa39.3753.5589.51324forward
CNT30666088Echinochloa crusgalliTriticum dicoccoides44.1145.2688.15363forward
CNT302119Echinochloa crusgalliZea mays45.3264.4288.74373forward
CNT30651308Echinochloa crusgalliRosa chinensis18.4726.3982.89152forward
CNT3035037Echinochloa crusgalliCucumis melo9.9627.3385.3782forward
CNT30558912Echinochloa crusgalliPanicum hallii8.3826.8598.5569forward
CNT3049718Echinochloa crusgalliCucumis sativus20.932.9580.81172forward

Expression of CNT30579578

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MGDGVLGSSCGGTNPLGASAVAASSAAARRGAGPRLLEEDDGMNAC*

Sequence

>CNT30579578
GTCGTAACGTTCGTTAGCAGCGTGGGCGTCGAACGATCAGTCACCAAAATTAAATCAACATGTACATATAATCCCATGTAGTAGCTCCAGAATCACCAAG
AAAGTAAAATTACATATCGACCCTCCATATCTCAAACCACCCAACAACGTACACCATCATCATTCTAGCTTAGAGGTCGAAGGTGTTCTTGCCGGTGAAC
TTGACCTCGATGGGGCTGACGTTCTTGCCGATGCTGCGGAAGTTCTGGCCCACGCCCTGCCTGCCGGCGTTGACCTTCTCCGGGTAGACGCCGTCCTTGG
GGTGGAGCCTGGTGCCCAGCGCCAGGCACTGCTCCTTGCGCGCCAGCTTCAGCAGGTTGGGCCCCTCCCGCATGATGGCGGCGCCGCCCGTCGGCATCTC
GAACACCTGCTCCTTGGGGGAGCTCCACGTGATCACGTAGAACTCCTCCACCTGCGCCTTGCGGAGGAGCCCGCCGGTGCTGCCGCCGAAGATGGGCGAC
GGGGTGTTGGGGTCCAGCTGCGGGGGGACGAACCCCTTGGGGGCCTCCGCCGTGGCTGCCTCCTCCGCCGCCGCCCGGAGAGGGGCCGGCCCGCGGTTGT
TGGAGGAGGACGACGGGATGAACGCCTGCTGAGCCGACCGCGGCGCCTTGGCCGGCGACCAGGCGGCGGCCAGGAGGTGGCGCGTGGCGGCGGAGGCTTG
CGTGGCCATGGCCATGGCTGCGGGGAGCGAGCGCGCGGATGGGGATCGGCGGTGGAGCTGGAGGAGGATGAGAGAATGATGAGTAGTGGCCTAGGGCGCG
GCGGTGGCAGGGAGCTAAGAGGT