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Detailed information on CNT3026774


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SJQ9|ALFC6_ARATH, E-value = 9e-105

BLAST vs NONCODE:
NONPOPT000956, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522989Populus trichocarpaSetaria italica26.5423.6881.36220forward
CNT30513666Populus trichocarpaJuglans regia56.9491.8382.63472forward
CNT30282161Populus trichocarpaChenopodium quinoa2435.680.9199forward
CNT3021376Populus trichocarpaCitrullus lanatus19.7823.6781.1164forward
CNT30729011Populus trichocarpaCorchorus capsularis18.9423.485.99157forward
CNT30526127Populus trichocarpaPhaseolus vulgaris23.6441.4479.08196forward
CNT30493761Populus trichocarpaOlea europaea13.8743.0783.48115forward
CNT30636619Populus trichocarpaCapsicum annuum48.4951.681.34402forward
CNT30222685Populus trichocarpaHordeum vulgare10.3729.2586.0586forward
CNT30564032Populus trichocarpaActinidia chinensis21.4748.3780.34178forward
CNT30552124Populus trichocarpaOryza glaberrima26.5423.7682.27220forward
CNT3074945Populus trichocarpaBrassica juncea23.7621.2380.2197forward
CNT30135152Populus trichocarpaLolium perenne25.2132.2579.43209forward
CNT3015043Populus trichocarpaZea mays13.6323.0684.07113forward
CNT30609114Populus trichocarpaGossypium raimondii3139.6680.54257forward
CNT30649836Populus trichocarpaRosa chinensis54.0439.9380.8448forward
CNT30717283Populus trichocarpaMalus domestica golden39.5748.9680.79328forward
CNT30625244Populus trichocarpaDaucus carota37.1546.8181.17308forward
CNT30720854Populus trichocarpaTriticum spelta23.7629.0180.71197forward
CNT30479170Populus trichocarpaArabidopsis halleri26.952.7281.61223forward
CNT30622084Populus trichocarpaCajanus cajan27.6230.8280.79229forward
CNT30154837Populus trichocarpaPrunus persica56.9451.1981.99472forward
CNT30120586Populus trichocarpaCitrus clementina35.9589.2285.57298forward
CNT3036222Populus trichocarpaCucumis melo19.5444.2680.86162forward
CNT30113854Populus trichocarpaFicus carica26.1830.6182.03217forward
CNT30724887Populus trichocarpaLupinus angustifolius27.0216.8284.82224forward

Expression of CNT3026774

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MASWLRVASSSLWPPDKNTIAGTAGGTVR*

>peptide 2 (36 aa)
MQQEHALLLRHTSQYRENHQPRFQALQWGPSHFPGR*

>peptide 3 (39 aa)
MDGQLRWLIGTNIEHSTPFGETCTSFVVLCAALAKAIKTL

>peptide 4 (40 aa)
KLNTPVFFLILLLSSSKQNPSSITEKRKLELWRDNNSPEL*

>peptide 5 (50 aa)
MVIIESFVACSKNTLCYCGTLLNIVRTINQDFRLYNGDQAIFLADDGISG*

Sequence

>CNT3026774
CAAGCTCAACACCCCAGTGTTTTTCCTCATCCTTTTATTATCTAGTTCCAAGCAAAATCCGAGCAGCATCACAGAAAAAAGAAAGCTAGAACTATGGCGA
GATAACAACTCTCCGGAACTTTGAAATGACGGGACTTCTTAGTACTTGTAGTCCTTGACGTGGAGGCTCTCTGAGGCACCCTCACCAAGAGTGGCATCAC
CCTTGTACGTACCAAGAGTAGCCTCTGAGTTAGCTTTGCATCTGGCAAGCAATGCAGCACGAGCCTTCCCCACATTCTCCGGCTTGCCAGCCCAGGCCTT
GAGGGTACTCTGCTGAAGAGCACGTCCAAAGGAAAAGGATAGAGACCATGGCTTCTTGGTTGAGGGTGGCCTCCTCCTCACTCTGGCCACCAGACAAGAA
TACAATAGCAGGAACTGCAGGGGGCACAGTACGTTGAAGTGCACGGACTGTGTACTCGGCAATAACCTCATGTGCAACCTTGGGAGCTTCTGATCCAGGA
GTAACCATGTTCGGCTTCAAGAGAGTACCCTCAAGTATGGCATGGTGATCATTGAGAGCTTTGTAGCATGCAGCAAGAACACGCTCTGTTACTGCGGCAC
ACTTCTCAATATCGTGAGAACCATCAACCAAGATTTCAGGCTCTACAATGGGGACCAAGCCATTTTCCTGGCAGATGACGGCATATCTGGCTAAACCATA
GGCATTCTCATGGATGGCCAGCTCAGATGGCTCATTGGCACCAATATTGAGCACAGCACGCCATTTGGCGAAACGTGCACCAGCTTCGTAGTACTTTGCG
CAGCGCTGGCCAAGGCCATCAAGACCCTG