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Detailed information on CNT30222685


BLAST search results

BLAST vs Swiss-Prot:
sp|P17784|ALFC1_ORYSJ, E-value = 3e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30615958Hordeum vulgareSesamum indicum46.2627.3684.56136forward
CNT3021292Hordeum vulgareCitrullus lanatus60.8826.6480.45179forward
CNT30729011Hordeum vulgareCorchorus capsularis43.218.9382.68127forward
CNT30636709Hordeum vulgareCapsicum annuum32.6516.2291.6796forward
CNT30568685Hordeum vulgareActinidia chinensis96.625.3380.28284forward
CNT30609114Hordeum vulgareGossypium raimondii88.4440.1282.31260forward
CNT30625244Hordeum vulgareDaucus carota41.518.5483.61122forward
CNT30720854Hordeum vulgareTriticum spelta47.6220.6296.43140forward
CNT30370572Hordeum vulgareOryza glumipatula43.5452.4682.81128forward
CNT30571536Hordeum vulgareVitis vinifera39.4623.1587.93116forward
CNT3026774Hordeum vulgarePopulus trichocarpa29.2510.3786.0586forward
CNT30120586Hordeum vulgareCitrus clementina20.7518.2688.5261forward
CNT3036222Hordeum vulgareCucumis melo31.2925.1482.6192forward
CNT30149185Hordeum vulgareBrachypodium distachyon29.2523.0690.786forward
CNT30551343Hordeum vulgareOryza brachyantha21.099.8790.3262forward

Expression of CNT30222685

Peptides detected in this lncRNA

>peptide 1 (96 aa)
TLVGAKGGLGVGLAPHQERLPGLLLVLRLARPGLEGALLEGTSEGEGKVPRLLGLELVHGIQVQSRLLLALSTGEEDDGGDGSRDGPLEGADGVLSN

>peptide 2 (38 aa)
MAFRFRVASSSLCPPERKTMAGTAAGTVLWRVRTVYSAM

>peptide 3 (34 aa)
HPCRCQGWPRSWPCTSPGTPSWPSPRSPPCQTRP*

Sequence

>CNT30222685
CACCCTTGTAGGTGCCAAGGGTGGCCTCGGAGTTGGCCTTGCACCTCACCAGGAACGCCTTCCTGGCCTTCTCCTCGTTCTCCGCCTTGCCAGACCAGGC
CTTGAGGGTGCTCTGCTGGAGGGCACGTCCGAAGGAGAAGGAAAGGTTCCAAGGCTTCTTGGTCTGGAGCTTGTTCATGGCATTCAGGTTCAGAGTCGCC
TCCTCCTCGCTCTGTCCACCGGAGAGGAAGACGATGGCGGGGACGGCAGCAGGGACGGTCCTCTGGAGGGTGCGGACGGTGTACTCAGCAATGA