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Detailed information on CNT3021376


BLAST search results

BLAST vs Swiss-Prot:
sp|P17784|ALFC1_ORYSJ, E-value = 2e-91

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670785Citrullus lanatusSetaria viridis23.8165.4883.03165forward
CNT30522989Citrullus lanatusSetaria italica36.6527.3481.89254forward
CNT30641234Citrullus lanatusNymphaea colorata37.5243.6278.85260forward
CNT30636709Citrullus lanatusCapsicum annuum24.3928.5583.43169forward
CNT30568685Citrullus lanatusActinidia chinensis32.920.3480.7228forward
CNT30552124Citrullus lanatusOryza glaberrima37.3727.9778.38259forward
CNT30458863Citrullus lanatusSaccharum spontaneum36.6518.1882.28254forward
CNT30609114Citrullus lanatusGossypium raimondii43.5846.682.12302forward
CNT30433768Citrullus lanatusPapaver somniferum34.0516.1281.78236forward
CNT3026774Citrullus lanatusPopulus trichocarpa23.6719.7881.1164forward
CNT30113854Citrullus lanatusFicus carica4342.0381.21298forward

Expression of CNT3021376

Peptides detected in this lncRNA

>peptide 1 (35 aa)
DKSLFFLLLFFNQKRKPEQLTQQPQQKLQKAYCCP*

>peptide 2 (36 aa)
MQQEPARSPQRICQCCEYHQQESQAQQWEQDHSPGR*

>peptide 3 (38 aa)
MALRLRVASSSLCPPDKKTMAGTAAGTVRSRARTVRTW*

>peptide 4 (61 aa)
INPCFFFFCFSTKRENQNNSLNNPNKNFKRLIVVPEHHQHISKCSNLMLKQTTQQHNNHRT*

Sequence

>CNT3021376
AGATAAATCCCTGTTTTTTCTTCTTTTGTTTTTCAACCAAAAGAGAAAACCAGAACAACTCACTCAACAACCCCAACAAAAACTTCAAAAGGCTTATTGT
TGTCCCTGAACATCATCAACACATTTCAAAATGTTCTAACCTTATGCTTAAACAAACTACACAACAACATAATAACCACAGAACATGACAATGACCCTTT
TTAGTATGTGTAACCCTTGACATGAAGACTCTCTGCCGCACCCTCGCTGAGCTCCGCATCGCCCTTGTATGTTCCTAGAGTCGCCTCCGAGTTTGCCTTG
CATCTTGTGAGGAAAGCAGCCCTTGCCTTCTCAACATTCTCCTCCTTTCCTGCCCATGCCTTGAGAGTACTTTGCTGAAGGGCACGTCCAAATGAGAAAG
ACAGCGACCATGGCTTCTTTCCCTTCAGCTTGTTCATGGCATTGAGGTTGAGGGTTGCCTCCTCCTCGCTCTGCCCGCCTGACAAGAAAACGATGGCAGG
AACCGCAGCAGGGACTGTACGTTCTAGAGCCCGGACGGTGAGGACGTGGTGATCGTTGAGGGCCTTGTAGCATGCAGCAAGAACCCGCTCGGTCACCTCA
GCGCATTTGTCAATGCTGTGAGTACCATCAACAAGAATCTCAGGCTCAACAATGGGAACAAGACCATTCTCCTGGCAGATAGCAGCATATCGA