Detailed information on CNT30671170


BLAST search results

BLAST vs Swiss-Prot:
sp|P17784|ALFC1_ORYSJ, E-value = 2e-39

BLAST vs NONCODE:
NONATHT002453, E-value = 1e-11

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641234Setaria viridisNymphaea colorata56.427.3587.73163forward
CNT30615958Setaria viridisSesamum indicum34.9520.3283.17101forward
CNT30282161Setaria viridisChenopodium quinoa30.815.9286.5289forward
CNT3021292Setaria viridisCitrullus lanatus48.120.6884.17139forward
CNT30493761Setaria viridisOlea europaea27.3429.5983.5479forward
CNT30222911Setaria viridisHordeum vulgare52.2554.1290.07151forward
CNT30564033Setaria viridisActinidia chinensis32.8718.188.4295forward
CNT30552124Setaria viridisOryza glaberrima46.0214.3691.73133forward
CNT30612844Setaria viridisArabis alpina51.2122.3280.41148forward
CNT30135152Setaria viridisLolium perenne44.9820.0690.77130forward
CNT30609114Setaria viridisGossypium raimondii49.1321.9182.39142forward
CNT30649836Setaria viridisRosa chinensis36.689.4583.96106forward
CNT30625244Setaria viridisDaucus carota32.8714.4483.1695forward
CNT30571536Setaria viridisVitis vinifera76.1243.9180220forward

Expression of CNT30671170

Peptides detected in this lncRNA

>peptide 1 (33 aa)
GGGRSVLVVLDVEALRDALAGGGITLVRAEGGL*

Sequence

>CNT30671170
AGGGGGAGGCAGATCAGTACTTGTAGTCCTTGACGTGGAGGCTCTCCGAGACGCCCTCGCCGGCGGCGGCATCACCCTTGTACGTGCCGAGGGTGGCCTC
TGAGTTGGCCTTGCACCTGGTGAGGAAGGGCACGGCCAAAGGAGAAAGACAGGGACCACGGCTTCTTGGTGTTGAGCTTGTTCATTGCGTTGAGGTTCAG
GGTGGCCTCCTCCTCGCTCTGTCCACCAGAGAGGAAGACGATGGCGGGCACGGCAGCAGGGACGGTCCTCTGGAGGGAACGGACAGTGT