« Back to Vitis vinifera search


Detailed information on CNT30571536


BLAST search results

BLAST vs Swiss-Prot:
sp|P17784|ALFC1_ORYSJ, E-value = 5e-61

BLAST vs NONCODE:
NONPOPT000956, E-value = 1e-31

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690595Vitis viniferaOryza sativa20.1611.2783.17101forward
CNT30671170Vitis viniferaSetaria viridis43.9176.1280220forward
CNT30522989Vitis viniferaSetaria italica23.1512.4982.76116forward
CNT30641234Vitis viniferaNymphaea colorata24.5520.6484.55123forward
CNT30513666Vitis viniferaJuglans regia26.1525.4981.68131forward
CNT30615958Vitis viniferaSesamum indicum28.5428.7783.22143forward
CNT30282161Vitis viniferaChenopodium quinoa40.5236.3180.3203forward
CNT3021292Vitis viniferaCitrullus lanatus31.1423.2186.54156forward
CNT30729010Vitis viniferaCorchorus capsularis24.1519.991.74121forward
CNT30526127Vitis viniferaPhaseolus vulgaris34.5336.5882.66173forward
CNT30493761Vitis viniferaOlea europaea11.5821.7287.9358forward
CNT30636709Vitis viniferaCapsicum annuum26.7522.6485.82134forward
CNT30222685Vitis viniferaHordeum vulgare23.1539.4687.93116forward
CNT30564033Vitis viniferaActinidia chinensis26.9525.7185.19135forward
CNT3085859Vitis viniferaVigna radiata34.5336.1283.24173forward
CNT30552124Vitis viniferaOryza glaberrima24.9513.583.2125forward
CNT30145974Vitis viniferaMedicago truncatula20.3632.0884.31102forward
CNT30458863Vitis viniferaSaccharum spontaneum43.3115.5380.18217forward
CNT3015043Vitis viniferaZea mays34.3335.180.81172forward
CNT30609114Vitis viniferaGossypium raimondii28.5422.0786.71143forward
CNT30649836Vitis viniferaRosa chinensis47.721.383.68239forward
CNT30625244Vitis viniferaDaucus carota42.3232.2286.79212forward
CNT30720854Vitis viniferaTriticum spelta20.1614.8784.16101forward
CNT30622084Vitis viniferaCajanus cajan42.5128.6783.1213forward
CNT30120586Vitis viniferaCitrus clementina16.9725.4588.2485forward
CNT3036222Vitis viniferaCucumis melo18.9625.9688.4295forward
CNT30113854Vitis viniferaFicus carica47.733.7184.1239forward

Expression of CNT30571536

Peptides detected in this lncRNA

>peptide 1 (98 aa)
MEAFRGTLSKFGITLVGSKSGLRVCLESALLKCTSKGEGQVPWLLPLELVHGIEVESGLLLTLPPRQKHNSRNSCRHSSLEGPNSVLGHHLWGNLLGF*

>peptide 2 (52 aa)
MALRLRVASSSLCPPDKNTIAGTAAGTVRWRVRTVYSATTSGETFLASDPGVT

>peptide 3 (35 aa)
MMPEMRPLMSPIPALHILSREKQKSKPNPKLHQYL*

Sequence

>CNT30571536
AGCTGATTATTCTACCCCCATTCAACTACAAGCATAAAAAGATCCGGAAGACAACGAAAAACACCCTAAACCTATGATGCCTGAGATGAGACCTTTAATG
TCCCCCATACCTGCACTGCATATACTCTCCAGAGAAAAACAGAAAAGCAAACCGAACCCAAAACTTCATCAGTACTTGTAGTCCTTGACATGGAGGCTTT
CCGCGGCACCCTCTCCAAGTTTGGCATCACCCTTGTAGGTTCCAAGAGTGGCCTCAGAGTTTGCCTTGAGAGTGCTCTGCTGAAGTGCACGTCCAAAGGA
GAAGGACAGGTTCCATGGCTTCTTCCCCTTGAGCTTGTTCATGGCATTGAGGTTGAGAGTGGCCTCCTCCTCACTCTGCCCCCCAGACAAAAACACAATA
GCAGGAACAGCTGCAGGCACAGTTCGCTGGAGGGTCCGAACAGTGTACTCGGCCACCACCTCTGGGGAAACCTTCTTGGCTTCTGATCCAGGAGTCACCA
T