Detailed information on CNT3015043


BLAST search results

BLAST vs Swiss-Prot:
sp|P08440|ALF_MAIZE, E-value = 5e-74

BLAST vs NONCODE:
NONPOPT000956, E-value = 2e-24

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675108Zea maysSetaria viridis24.930.6595.9122forward
CNT30522989Zea maysSetaria italica52.4527.6691.83257forward
CNT30641283Zea maysNymphaea colorata43.8810.9784.19215forward
CNT30282161Zea maysChenopodium quinoa48.3742.481.01237forward
CNT30729011Zea maysCorchorus capsularis24.0817.5981.36118forward
CNT30636709Zea maysCapsicum annuum20.216.7286.8799forward
CNT30222508Zea maysHordeum vulgare32.8654.0388.2161forward
CNT30568685Zea maysActinidia chinensis33.0614.4583.33162forward
CNT30135152Zea maysLolium perenne52.4539.6687.55257forward
CNT30609114Zea maysGossypium raimondii22.6517.1383.78111forward
CNT30625244Zea maysDaucus carota48.7836.3278.24239forward
CNT30720854Zea maysTriticum spelta25.9218.788.98127forward
CNT30571536Zea maysVitis vinifera35.134.3380.81172forward
CNT3026774Zea maysPopulus trichocarpa23.0613.6384.07113forward
CNT30120586Zea maysCitrus clementina16.9424.8589.1683forward
CNT30113854Zea maysFicus carica49.5934.2782.3243forward

Expression of CNT3015043

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MALRFRVASSSLCPPERKTTAGTAAGTVLWRVRTVYWAITSGVTFLESEPGVTMLGFRRVPSRRTWCSLRAL*

>peptide 2 (76 aa)
EFQNNGIAKRSNSVLVVLDVKALGVGGSITLVGAEGSLGVGLAPGEEGRSSLLHVLHLASPGLEGARLEGPMASWC*

Sequence

>CNT3015043
GAGTTCCAAAACAACGGGATCGCAAAGAGAAGCAACTCAGTACTTGTAGTCCTTGACGTGAAGGCTCTCGGTGTCGGCGGCAGCATCACCCTTGTAGGTG
CCGAGGGTAGCCTCGGAGTTGGCCTTGCACCTGGCGAGGAAGGCCGCTCTAGCCTTCTCCACGTTCTCCACCTTGCCAGCCCAGGCCTTGAGGGTGCTCG
CCTGGAGGGGCCCATGGCTTCTTGGTGCTGAGCTTGTTCATGGCATTGAGATTCAGGGTGGCCTCCTCCTCGCTCTGTCCACCGGAGAGGAAGACAACAG
CAGGCACAGCAGCAGGGACGGTCCTCTGGAGGGTACGGACGGTGTACTGGGCGATCACCTCAGGTGTCACCTTCTTAGAGTCGGAGCCAGGAGTCACCAT
GTTGGGCTTCAGGAGGGTACCCTCCAGGAGGACATGGTGCTCGTTGAGAGCCTTGTAGCAGGCAGCAAGGACTGTCTCAGTGACGTAAGC