« Back to Amborella trichopoda search


Detailed information on CNT3055927


BLAST search results

BLAST vs Swiss-Prot:
sp|P27522|CB13_SOLLC, E-value = 4e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691521Amborella trichopodaOryza sativa25.437.5482.73110forward
CNT30372056Amborella trichopodaArabidopsis thaliana22.6315.9685.7198forward
CNT30281438Amborella trichopodaChenopodium quinoa25.879.8883.04112forward
CNT30379782Amborella trichopodaManihot esculenta22.415.3283.5197forward
CNT30526207Amborella trichopodaPhaseolus vulgaris37.1813.9980.12161forward
CNT30486017Amborella trichopodaOlea europaea20.098.883.9187forward
CNT3045167Amborella trichopodaPrunus dulcis31.8739.0982.61138forward
CNT30303678Amborella trichopodaTriticum aestivum27.9418.1786.78121forward
CNT30397679Amborella trichopodaTriticum turgidum24.9438.8587.96108forward
CNT30540898Amborella trichopodaBrassica napus28.1821.9481.15122forward
CNT30442289Amborella trichopodaAegilops tauschii27.9419.1586.78121forward
CNT30313529Amborella trichopodaCamelina sativa19.422.5284.5284forward
CNT3060116Amborella trichopodaArabidopsis lyrata22.6320.586.7398forward
CNT3077678Amborella trichopodaBrassica juncea28.1819.981.15122forward
CNT30264429Amborella trichopodaBrassica rapa28.1816.981.15122forward
CNT30611481Amborella trichopodaArabis alpina30.9516.4482.84134forward
CNT30476581Amborella trichopodaSaccharum spontaneum27.9413.7586.78121forward
CNT30140296Amborella trichopodaLolium perenne27.9412.4783.47121forward
CNT30607765Amborella trichopodaGossypium raimondii23.0914.9582100forward
CNT30217954Amborella trichopodaKalanchoe fedtschenkoi32.5639.1784.4141forward
CNT30210187Amborella trichopodaHelianthus annuus27.2514.4381.36118forward
CNT30624860Amborella trichopodaDaucus carota28.1814.1481.97122forward
CNT30687021Amborella trichopodaTriticum urartu27.7124.5487.5120forward
CNT30350305Amborella trichopodaEragrostis tef27.9414.6788.43121forward
CNT30621314Amborella trichopodaCajanus cajan28.879.9180.8125forward
CNT30595683Amborella trichopodaOryza meridionalis21.257.0986.9692forward
CNT30359130Amborella trichopodaLactuca sativa30.9526.4382.09134forward
CNT30118713Amborella trichopodaCitrus clementina20.0914.4586.2187forward
CNT30329767Amborella trichopodaDioscorea rotundata23.7916.8383.5103forward
CNT30583045Amborella trichopodaEchinochloa crusgalli27.9415.6585.12121forward
CNT30115627Amborella trichopodaOryza nivara27.947.0784.3121forward
CNT30557430Amborella trichopodaPanicum hallii27.9413.7886.78121forward
CNT30725730Amborella trichopodaLupinus angustifolius25.8716.7283.93112forward

Expression of CNT3055927

Peptides detected in this lncRNA

>peptide 1 (34 aa)
LLLALLIICQAQWIENRTARIRRLTRSPKPLLQP*

>peptide 2 (72 aa)
SFLLFSSFAKPNGLKIGPPGYAGSPDPPSHFSNPKKYCFPMEPGLYQSWNLRCSAKPMRAISKTKRVKGSAQ*

Sequence

>CNT3055927
CTCCTTCTTGCTCTTCTCATCATTTGCCAAGCCCAATGGATTGAAAATCGGACCGCCAGGATACGCCGGCTCACCCGATCCCCCAAGCCACTTCTCCAAC
CCTAAGAAATACTGTTTTCCCATGGAGCCAGGGTTATACCAGTCTTGGAACCTCCGGTGCTCCGCGAAGCCCATGAGGGCCATTTCGAAGACGAAGAGGG
TGAAGGGGTCGGCCCAGTAGTTGTAGGTGCTCGATGAAGAAGAGGCAGCAGCAGCTGTAGCTGTAGCCGTTAGAGAGAGGGACGAAGAAACCAACGCCAT
CTTCCTTTCTCTCTCTTCCTACTTCCTTTCTCTCTCTTCCTACTTCCTTTCTCTCTCTACAATCTAAACCCCAACCCTTGGCTTTTGATCTGAAAACAAA
CCAGTAGGAGGAGCATATGAAATGAAATGAAAT