Detailed information on CNT30557430


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 2e-73

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30397679Panicum halliiTriticum turgidum13.7843.5390.08121forward
CNT30595683Panicum halliiOryza meridionalis37.2425.2185.63327forward
CNT30573352Panicum halliiVitis vinifera22.4430.2180.2197forward
CNT3055927Panicum halliiAmborella trichopoda13.7827.9486.78121forward

Expression of CNT30557430

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MHDATPQTPLPSASQPAYEHTSIDHLSPPTTTTGGGTPVMHRTV*

>peptide 2 (63 aa)
MRSRIGARDLGRRAGAGPDDEGRLPGRRRPGDGRLHGAAEQLPPGEESLGRHGSLAASAQLPTR

>peptide 3 (42 aa)
MTPVLNHGSAVSAGMMPSLPKISGAMAPAAPSMAKRPLITSP*

>peptide 4 (36 aa)
MQHLKPLFHQPASQHMNTHRSITSRLPLQQQAAAHP*

>peptide 5 (36 aa)
DELLICYKQRAGRPRMIDHARCNTSNPSSISQPASI*

Sequence

>CNT30557430
AGGATGAATTACTAATTTGTTACAAGCAGCGAGCAGGCCGGCCACGGATGATAGATCATGCACGATGCAACACCTCAAACCCCTCTTCCATCAGCCAGCC
AGCCAGCATATGAACACACATCGATCGATCACCTCTCGCCTCCCACTACAACAACAGGCGGCGGCACACCCGTGATGCACCGCACGGTCTAGTGGAACTT
GAGGCTGGTGAGCACGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGAGCAGGTTCTGGTAGGGTCCGACACCGGTGACGAGCCCCTGGATGAAGTAGCCG
AGGAAGTACTGCTTGCCCATGGAGCCCGGGTTGTACCAGTCCTGGAGGCGGCGGTGCTCGGCGAAGCCCATGAGCGCCATGTTGAAGACGAAGAGCGTGT
AGGAGTCGGCCCAGTAGTTGTAGGTGCCCGCGGGAGGGATGACCCCCGTCTTGAACCACGGCAGCGCGGTCTCCGCCGGGATGATGCCCAGCTTGCCGAA
GATCTCCGGGGCGATGGCGCCCGCCGCGCCCAGCATGGCGAAGCGGCCGTTGATCACCTCGCCGTAGGTAGGAGAGGGACTGCTTGGACGCGAACCACAG
CTGCCTGTCGGCGCCTTGCTGCAAGAGAAACAAGATTCAGTTCATTATCCATTCACGGATCAGTAGCTCGCCGTAGAGACGACGATGAGATCGAGGATCG
GAGCTAGGGACCTTGGCCGGCGGGCTGGAGCTGGCCCTGACGACGAAGGGCGCCTTCCTGGCCGACGACGACCGGGAGACGGCCGACTGCACGGGGCGGC
CGAGCAGCTGCCGCCCGGAGAGGAGAGCCTGGGCCGCCATGGATCGCTCGCTGCTTCTGCTCAGCTGCCGACACGGGG