Detailed information on CNT30359130


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 2e-61

BLAST vs NONCODE:
NONBNAT006830, E-value = 8e-33

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30405505Lactuca sativaBeta vulgaris29.3940.3882.55149forward
CNT30631224Lactuca sativaVigna unguiculata59.5737.0680.46302forward
CNT30422640Lactuca sativaPapaver somniferum42.652.8186.11216forward
CNT3055927Lactuca sativaAmborella trichopoda26.4330.9582.09134forward

Expression of CNT30359130

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MPGHPTLKNLSPTPRSIASPLTLGYTSLGVFYALRNPSTPFPIQIG*

>peptide 2 (30 aa)
MESLVELEASQDIVVDRISQMVQPRSPNPE*

Sequence

>CNT30359130
AGTAGCAACAAGGTTTCCGTTATATATCATTAATTTTGTTACAAATTAATAATAGTATTCCGAAGAAATAGATCGATCTGCACATGATATTACATATGAT
GTAGGAAAGAAAATGGAGAGTCTAGTGGAACTTGAGGCTAGTCAAGACATTGTTGTTGACAGGATCAGCCAAATGGTCCAACCCCGGTCACCAAACCCTG
AATGAAGTAACCCAAGATTGCTAACATAGCCAATCTTCCATTCTTGATTTCTTTTAGCTTCAGTTCCTTCATTGACTTCTCATCTTTCCCGAACCCGAGT
GGGTTAAAGAACGGCCCACCTGGGTATGCCGGGTCACCCGACCCTGAAAAACCTTTCTCCAACCCCAAGAAGTATTGCTTCCCCATTGACCCTGGGTTAT
ACCAGTCTTGGAGTCTTCTATGCTCTGCGAAACCCATCAACGCCATTTCCAATACAAATAGGGTGAAAGGGTCTGCCCAGTAGTTGTATGTTCCGGCGGG
GGGAATT