« Back to Brassica rapa search


Detailed information on CNT30264429


BLAST search results

BLAST vs Swiss-Prot:
sp|P12332|CB21_SILLB, E-value = 1e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30173586Brassica rapaTrifolium pratense31.5823.8580.26228forward
CNT30573352Brassica rapaVitis vinifera47.0952.1581.47340forward
CNT3055927Brassica rapaAmborella trichopoda16.928.1881.15122forward

Expression of CNT30264429

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MKIISVELEAGQDIVVDWIRQMIKKYCLPIDPGLYQSCNLRCSANPIKAISRTKSV*

>peptide 2 (30 aa)
WTNDLKPQHISDLYLFEMSTFQAPQANIRQ*

Sequence

>CNT30264429
TGGACTAATGATCTGAAACCACAACATATCTCAGATTTATATTTATTTGAGATGAGTACTTTTCAAGCACCACAGGCAAATATTCGACAATAATCTTTTA
AATATGTAACTGACTTCCTTGGTGATTGGAAAACCCAACTATTAATCCTAGAAGTTGTTCTTTTTGGCCATTGACATTTTCATATCTTACAAAGATATAA
TATGTTTACAAAGGGTGGTACAATACGAAGACTGTAGGATACAAGAGAATGAGAGTCCAACATAAAACACATGGGATGATATGAAGATCATCTCAGTGGA
ACTTGAGGCTGGTCAGGACATTGTTGTTGACTGGATCCGCCAAATGATCAAGAAGTACTGTTTGCCCATTGATCCTGGGTTGTACCAGTCCTGCAACCTC
CGGTGCTCAGCAAATCCCATCAAAGCCATCTCGAGAACAAAGAGTGTGTAAGGGTCTGCCCAGTAGCTGTACGTCCCTGCAGGTGGAATCACACCGGTTT
GGAACCAAGGAAGGGCAGTGTCTGCTGGAATCAAACCAGCTTTGCCAAGAATCTCAGGGGCAATAGCTCCAGCTGCACCCAACATAGCGAACCGTCCGTT
GATGATCTCTCCGTAGGCTAACCATCTCGGTTCGATGAATCCTCCAGTACCCTCTGGGTCTGAAAGACCAAGAGGGTCGAATCCATAGTCGCCAGGTAAG
CTGCAGATTAATCACAACATCT