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Detailed information on CNT30540898


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 2e-85

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30125939Brassica napusPhyscomitrium patens22.4837.4382.4125forward
CNT30303678Brassica napusTriticum aestivum21.5818.0281.67120forward
CNT30238557Brassica napusBrassica oleracea99.2884.0298.37552forward
CNT30145875Brassica napusMedicago truncatula71.0423.9781.52395forward
CNT3077678Brassica napusBrassica juncea10090.7100556forward
CNT30264551Brassica napusBrassica rapa74.8253.96100416forward
CNT30649241Brassica napusRosa chinensis53.9626.3680300forward
CNT30214152Brassica napusHelianthus annuus26.2633.1184.93146forward
CNT30625265Brassica napusDaucus carota55.9434.8383.28311forward
CNT30687021Brassica napusTriticum urartu21.5824.5481.67120forward
CNT30359247Brassica napusLactuca sativa67.0944.380.43373forward
CNT30422640Brassica napusPapaver somniferum14.9320.2986.7583forward
CNT3055927Brassica napusAmborella trichopoda21.9428.1881.15122forward
CNT30150205Brassica napusBrachypodium distachyon16.0121.1985.3989forward

Expression of CNT30540898

Peptides detected in this lncRNA

>peptide 1 (32 aa)
AIDIFISYKDIICLQRVVQYEDCRIQENESPT*

Sequence

>CNT30540898
GCCATTGACATTTTCATATCTTACAAAGATATAATATGTTTACAAAGGGTGGTACAATACGAAGACTGTAGGATACAAGAGAATGAGAGTCCAACATAAA
ACACATGGGATGATATGAAGATCATCTCAGTGGAACTTGAGTTTCAACTCCTTCATTGACTTCTCGTCTTTCCCAAACCCAAGAGGGTTAAAGAAAGGTC
CCCCGGGGTAAGACGGGTCACCCGAACCGGCAAAACCTTTCTCTAAGCCCAAGAAGTACTGTTTGCCCATTGATCCTGGGTTGTACCAGTCCTGCAACCT
CCGGTGCTCAGCAAATCCCATCAAAGCCATCTCGAGAACAAAGAGTGTGTAAGGGTCTGCCCAGTAGCTGTACGTCCCTGCAGGTGGAATCACACCGGTT
TGGAACCAAGGAAGGGCAGTGTCTGCTGGAATCAAACCAGCTTTGCCAAGAATCTCAGGGGCAATAGCTCCAGCTGCACCCAACATAGCGAACCGTCCGT
TGATGATCTCTCCGTAGGCTAACCATCTCGGTTCGATGAATCCTCCAGTACCCTCT